Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139366436
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Entry
139366436 CDS
T10872
Name
(RefSeq) protocadherin-1-like isoform X1
KO
K16498
protocadherin delta 1
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
139366436
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ocla01009
]
139366436
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ocla04515
]
139366436
Protein phosphatases and associated proteins [BR:
ocla01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
139366436
Cell adhesion molecules [BR:
ocla04515
]
Cadherins
Protocadherins
139366436
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_2
Cadherin_CELSR2_9th
Cadherin_4
SGBP_BT4661-like
PDGLE
Syndecan
Fibulin_C
NnrU
Motif
Other DBs
NCBI-GeneID:
139366436
NCBI-ProteinID:
XP_070960017
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All DBs
Position
14:complement(24931878..25225625)
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AA seq
1228 aa
AA seq
DB search
MSRSAQSCPIESPMRFQSSGVMVLRWDATLVLAAMLLVCCAADPTDILYRMLEEQPPNTL
IGSLASDEGLPDSGHLYKLEVGTPYLRVDGKTGDIYTTEVPIDRETLRDCRNLLEGDKCF
LEFEVSITDLKQGQGPRLIEGRIEVQDVNDNTPQFTSPILMLSIPENTHIGALFSIPMAS
DKDSGHNGVAEYSLSAGPDADQLFSLQVAEDTDEKQPQLIVMGNLDREQKDSYDLNIRVV
DGGTPPRASSALLRVTVTDQNDNAPKFERSHYEAELAENSPVGHSVLQVKANDADMGTNG
EIDYSLHQASDAVQRLLRIDRSTGIIYVKGLVDREEESFLKFFVVAKDRGPNSKSSKVLV
TINVKDQNDNAPAIEIRGIGLVTHHDGVANISEDMPIGTAVALVQVSDRDEGENAVVTCV
VAGDVPFQLRPASESANDRKRKYFLQTTTLLDYERIKDYRIEIVAVDSGNPALSSTNSLK
VQVTDMNDNAPVFSPNLFEVDFAEENQPGDKVLDVVATDADSGSNAELTYSIIMDSTTKG
LFEIDPKTGEVHVRNTLDREHREQYEFHVAAADKGSPSLRGTATVVVKVLDRNDNDPKFM
LSGYSFSVLENMPPLSPVGMVTVIDADKGENAMVRLSVEPDNGKFVIQNGTGTILSSISF
DREKESTYTFRLRAVDAGDPPRSSYVGVTINVLDENDNSPYVTKPSNSSYKYLPPLTTPE
TRIEVVEAEDIDTGPNSELVFSITGGNPYGLFHISPNNGEITLAQEFTRKHNGLHRLVVK
VSDKGKPPRHTTALVHIFVNETMGNITLIESLVGHSLYTPLDRDIAGDPNYALAQRSNIL
YGSLAGIAGVILVIVVVVVIRHRMQKDTKSGYQAGKKESKDLYAPKAGPKNGKGKKSKKG
KVPKPTKPLEEDEEASLQKGLNFNLINDSVNDSPRIHLPLNYPPGSPDLGRHYRSNSPLP
SIQLQPQSPSASKKHQAVQDLPATNTFVGTGDNNSTGSDQYSDYSYKANPPKYSNKQLPH
RRVTFSTANQAQDLQDPSQHSYYDSGLEESETPSSKSSSGPRIGPLALPEDHYERTTPDG
SIGEMEHPENDLRPLPDVAMTGNCTHECTEFGHSDACWMPGQPSPNRKSSTKNAPKLSTF
VPYLESEGQDHLMANGSPKPMADERGSAGGGSGGSKVANIRFLPPYSSAFSGGSDSGKGC
EEIPLSQAAEYHSATTPTNQGSKREIYL
NT seq
3687 nt
NT seq
+upstream
nt +downstream
nt
atgtcaagatcagcacaatcttgccccattgaatcaccgatgcgtttccagtcaagcgga
gtgatggtgctgaggtgggatgccacgctggtgttggccgccatgcttctggtttgctgt
gccgccgatcccactgacattctctaccggatgctcgaggagcagccgcccaacacgttg
atcggcagcctggcatcggacgagggcctgcccgactcaggccacctgtacaagctggag
gtgggcaccccttacctgcgcgtggacggcaagacgggagacatttacaccacagaggtc
cccatcgaccgtgagacactgcgggactgccgcaacctgctcgagggcgacaagtgcttc
ctggagttcgaggtgtccatcacggacctgaagcagggccagggaccgcgactgatcgag
ggccgcatcgaggtgcaggacgtcaatgacaacacaccccagttcacctcgcccatcctc
atgctgtccatcccagagaacacacacatcggggcgctcttctccatccccatggccagc
gacaaggactcgggccacaacggcgtggccgagtactcgctcagcgccgggccagacgcc
gaccagctcttcagcctgcaggtggccgaggacacagacgagaagcagccgcagctcatc
gtcatgggcaacctggaccgcgagcagaaagactcgtacgatctcaacatccgtgtggtg
gacgggggcacaccaccgcgagccagcagcgccctgctgagggtgaccgtcaccgaccag
aacgacaacgcacccaagtttgagaggagccactatgaggctgagctggctgagaacagc
cctgtgggacactcagtcttgcaggtgaaagccaacgacgctgacatgggtaccaacggg
gagatcgactatagcctgcaccaggcctccgatgccgtccagaggttgctacgcattgac
cgctccacagggatcatctacgtcaaggggctggtggaccgagaggaggagagcttcctc
aagttcttcgtggtggccaaggatcgcggccccaactcgaagagctccaaagtcctggtg
accatcaacgtcaaggaccagaacgataatgcacccgccatcgagatccgtggcatcggc
ctggtcacccaccacgacggtgtggccaacatctcagaggacatgcccatcggcacagct
gtagccctggtgcaggtgtcggatcgtgatgaaggggagaatgctgtggtcacctgtgtg
gtggccggggacgtccccttccagctgcggcccgccagcgagtcagccaacgaccgcaag
aggaaatacttcctgcagaccacgaccctgctagactacgagcgcatcaaggactacagg
attgaaatagtagcggtggactccggtaaccctgcactgtccagcacaaactccctgaag
gtgcaagtcaccgacatgaatgacaatgcccctgtcttctcccccaatctgtttgaggtg
gactttgcagaggagaatcagccaggtgataaggtcctggatgtggtggccacagacgcg
gacagtgggtccaacgcagagctgacctacagcatcatcatggactcgaccactaagggg
ctctttgagatcgaccccaaaacgggagaggtgcacgtgaggaatacgctggaccgtgag
cacagggagcagtacgagttccacgtggcggcagccgataagggctcgcctagcctgagg
gggacggccacggtggtggtcaaggtgctggaccgtaacgacaacgaccccaagttcatg
ttgagtggctacagcttctccgtcttggagaacatgcctccgctcagccctgttggcatg
gtgacggtcatcgacgcagataagggcgagaacgccatggtgcgactctcggtggagccc
gacaatggcaagtttgtcatccagaatggcacaggtactatcctctccagcatatccttt
gaccgtgagaaggagagcacatacactttccgcctcagggctgtggacgccggtgaccct
cccaggtcctcctacgtgggtgtgaccatcaacgtcttggacgagaacgataactccccc
tacgtcaccaagccctctaactcctcctacaagtacctcccacctctcacgacccccgag
acacgcattgaagtggtggaggccgaagacattgacacgggacccaactccgagctggtc
ttcagcattactggcgggaacccctacggactgtttcacatctcgcccaacaatggggag
atcaccctggcccaggagttcacccgcaagcacaacgggctccaccgtctggtggtgaag
gtgagcgacaaaggcaagccaccacgccacaccaccgccctggtccacatcttcgtcaat
gagaccatgggcaacatcaccctgatcgagtctctggtgggtcacagcctctacactcct
ctggacagagacattgccggggaccccaactatgcgctggcccagcgcagcaacatcctg
tatggcagcctagcgggcatcgccggagtcatcctggtcatcgtggtggtggtggtgatc
cgtcatcgcatgcagaaggacaccaagagcggctaccaggcgggcaagaaggagagcaag
gacctgtatgcccccaaagcagggcccaagaatggcaagggcaaaaagagcaagaaaggc
aaggtgcccaagcccaccaagccactggaggaggacgaagaggccagcctccagaagggc
ctcaacttcaacctcataaacgatagtgtcaatgacagtccccggatccacctgcccctc
aactaccccccgggcagccccgacctgggcagacactaccgctccaactccccactgccc
tccatccagctgcagccccagtccccctctgcctccaagaagcaccaagccgttcaggac
ctgcccgccaccaacacctttgtgggcacaggtgacaacaactctacaggctccgatcaa
tattcggattacagctacaaggcaaacccgccgaaatacagcaacaaacagctcccacat
cgccgagtgaccttctccacggccaatcaggctcaagacctgcaggacccctcccagcac
agctactacgacagcggattggaggaatcggagacccccagctccaaatcgtcatcgggg
ccccgcattgggcccctggccctgcctgaggaccactacgagaggaccaccccggacggc
agtatcggagagatggagcacccggagaacgatctcaggcctctgcctgatgtggccatg
actggaaactgcacccatgagtgtaccgagttcggccactccgacgcctgctggatgcct
ggccagccctcccccaatcgtaagagctccaccaagaacgcccccaagctctccaccttc
gtgccttacctggagagtgaggggcaggaccacctcatggccaacggcagtcccaagccc
atggcagacgagcgtgggagtgctggaggtggcagcggaggctccaaggtggctaacatc
cgcttcctgcccccttacagcagtgccttctccgggggcagcgactccggcaaaggctgc
gaggagatccccctgagccaggcagccgagtaccattccgccaccacacccaccaaccag
ggctccaagagagagatttacctgtga
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