Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139366463
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Entry
139366463 CDS
T10872
Name
(RefSeq) pre-mRNA-processing factor 39-like
KO
K13217
pre-mRNA-processing factor 39
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
Spliceosome [BR:
ocla03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
139366463
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
Suf
TPR_14
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
TPR_19
TPR_12
TPR_16
HrpB1_HrpK
TPR_MalT
UTP6_C
TPR_21
Motif
Other DBs
NCBI-GeneID:
139366463
NCBI-ProteinID:
XP_070960065
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All DBs
Position
14:complement(26375976..26387475)
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AA seq
726 aa
AA seq
DB search
MAAEGSDSEDLNTNGLMEAPSALEAMEAVQLPTENEEASEENGGGGASEAPEAAAATSYN
MPLAENEEEEDGEFPADFDRLWKLAHDNPQDFSSWTDLLQYCEQESHMTASRRALVAFLA
RYPLCYGYWKKFADLERRAGYTNKAQEVCVQGLKAIPLSVDLWIHYINLLLGTLNMNLPE
SSQRIRSAFEEAVTAAGLDFHSDRLWELYIEWEKEQGDMKAATGVYDRVLRVPTQLYSSH
YEKFKTHLNAHAPKDVLSAVEYEGLLEESKQSHKTEKSELAEGEEELPPGEEKEPTEEEL
IPKMRELLLARREKVYQDLEGEVRKRWNFEEAIKRPYFHVKPLDRTQLRAWHSYLDWELT
ELGGGGEKEVKTETEPEAMEGQEEEEKKGSKSSEIVAGGDRRVRILFERCLIACALYEEF
WTKYVQYLEPQSLDEARGVFRRACEIHLAHKHTMHLQWATFEERHGDLTEARRVLEALET
SVPGLAMVRLRRAGLERRAGRLDESEALLRDAVAQAKETPHLHAFYSIKLARLLLKLCKN
PSKARGVLQEALEISPDDGKLHLNLLELEVSGDPRGSAEGVQQCVARALAAPLSPQTKIL
FSQRGLQYAEDYGTSVQSVLTVYEEHQKLLKELGNKKRVAENGDSEDPEKMSKGEDGSAV
PAPPQAPPTMPHVPMTTPPPPMMGGDMSAVHAGYGGYGSWHQQPQYGGYGGYQQAWNYNQ
GYYPPS
NT seq
2181 nt
NT seq
+upstream
nt +downstream
nt
atggcggcagaaggctcggattcagaagacctgaacaccaacgggctaatggaggctcct
tcagctctggaagccatggaggctgtccaacttccaacagagaatgaagaggcatcagag
gagaatggtggaggaggagcctctgaggctccagaagcagcagctgcgacatcatacaac
atgcctctggcagagaatgaggaggaagaagacggagagttccctgcggactttgaccga
ctctggaagctggcccatgacaatccacaggacttctctagctggactgacctactgcag
tactgtgagcaagagagtcacatgacagcgtcacgtcgggcgctggtagcctttctggca
cggtacccactgtgctacggatactggaagaagtttgccgacctggagcgacgtgctggc
tacaccaacaaagctcaggaggtgtgtgttcagggtctgaaggccattcccctgagtgta
gatctgtggatccactacattaacctgctactgggcacgctcaacatgaacctgccagag
tcctctcagcgcattcgcagtgcatttgaggaggcggtgacggcagcaggactggacttc
cactctgaccgtctgtgggagctgtacatcgagtgggagaaggagcagggagacatgaag
gctgccactggagtctacgacagagtcctcagagtccccactcagctgtacagcagccac
tatgagaaattcaagactcatcttaatgcccatgcgcccaaggacgtcctctcagcagtg
gagtatgaggggttgcttgaggaatctaaacagagccacaagactgagaagtctgagtta
gctgagggggaagaggagttaccacctggggaagagaaggaacctacagaggaagaactg
attccgaaaatgcgagagctcctattggctcgcagagagaaggtgtaccaagacctggag
ggagaggtcaggaagaggtggaactttgaggaagctatcaagcgtccatatttccacgtg
aagcctctggaccggacccagctgagggcctggcactcctacctggactgggagctcacc
gagctgggggggggcggtgaaaaggaggtgaagaccgagaccgaaccagaagccatggag
ggccaggaagaggaggaaaagaaagggtcaaagagcagtgagatcgttgccgggggagac
cggagggtacggatcctgtttgagcgctgtctgattgcctgcgctctctacgaggagttc
tggaccaagtatgttcagtacctggaacctcagagtctggatgaggcgcggggagtgttt
cggcgagcctgtgagatccacctggcccacaaacacaccatgcacctgcagtgggccacc
ttcgaggagaggcatggtgacctaacagaggcacggcgagtgttggaggctctggaaacc
tcagtgccggggttggccatggtccggctgcgcagggcggggctagagagacgggcgggc
cggctagatgaatctgaagctctgctcagggacgcggtggcccaggccaaagagacacct
cacctccatgcgttctactccatcaaactggcccggctgctgctgaagctctgcaagaac
cccagcaaggcccggggagtcctgcaggaggcgctggagattagcccggatgacggtaag
ctgcacctgaacctgctggagctggaggtgtccggtgaccccagagggtcggccgagggg
gtgcagcagtgcgtggcgcgggcgctggccgcacccctctccccacagaccaagatcctc
ttctcccagaggggcctgcagtacgctgaggactatgggacctctgtgcaaagtgtgcta
acagtctatgaggagcatcagaagctactgaaagagctcggcaacaagaagagagtggct
gagaacggagacagtgaggacccagagaagatgagtaaaggagaagatggctctgctgtg
cccgctccaccacaggcccctcccacaatgccccatgtccccatgacgacaccacctcca
cccatgatgggtggggacatgagtgcggttcatgcaggctatggaggatatggaagctgg
catcagcaaccacagtatgggggatacggaggctaccagcaagcctggaactacaatcag
ggttactaccctcccagctaa
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