Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139366877
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Entry
139366877 CDS
T10872
Name
(RefSeq) transient receptor potential cation channel subfamily A member 1-like
KO
K04984
transient receptor potential cation channel subfamily A member 1
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ocla04040
]
139366877
Ion channels [BR:
ocla04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
139366877
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GFIT
Motif
Pfam:
Ank_2
Ank
Ank_3
Ank_4
Ank_5
Ion_trans
DBB
PKD_channel
Motif
Other DBs
NCBI-GeneID:
139366877
NCBI-ProteinID:
XP_070960681
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Position
15:6284593..6373919
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AA seq
1121 aa
AA seq
DB search
MQLTKEVARQNSSYKCVIEDATSFHQLTANTDVMLAATNLFEWARGGDVSQLQGLVRRNP
GVLREQDDSGASLVHHAAGAGNTPVIRFICSITHRDEWNLYDDEGSMPLHWAVERNQPES
CRALLELGVEPNVLNKALMSPLHLAVSHQHNHLVKLLLSHYKTESNLEGCLGNTPVMLAC
SINNTEALSILLKHGAQLSSQNKLGHFAIHTAAFAGAKKAMEVILKAGEEMGHSIEEHIN
VLDKSCSSPLHMAVRGGNVDVIKFCIQKGAKIDQQQVDRSTALHFACSQGATEAVKLMLS
SYSRLDSIINLPDGACQTPLHRSTIFDHTELAEYLISKGADIDYIDCKGLSPLLLATNCG
AWRSVALLLSKGANVNIKDKSGCNFLHRAILQPKGLKNLTGDILQHSSMMDLLSTEDNEG
CTPLHYACRLGIHESVKNILVLQVSLDRKSKDKKSALHFAAQYGRINTCQRLLETITDSR
LLNEGDERGLTPLHLASGGGHAKVVELLLRKGALFHSDYKGWTCLHHAAAEGYTQTMKIV
LGTNIKLLDKLDEDGSTALHVAAREGQVAAVRLLLQRGAEISLNKSHASFFHEALQHRRK
DVVNAIIDSDRCSDTLRTFKHDAGKRCPVLELVDLLPESCKHLLDCCIRESTDDDNSPDY
HIEYNFQWLQAPIALKKHAKTDESLKVQPLAALNAMVNNNRIELLTHPVCKKYLEMKWVA
YGSTAHLLNLFVYLLGLLPLTHLIVSLRPSLDYTGPDNTTAVTMVPISFREQNSFLSICM
VMVLVMNIYSMGKEVMQMYHQRLSYLKDISNIQDWFSIILSLLFVIALFFNAEGSWHWQA
GALAIIMSWVNFLLYLQRFEHFGIYVVMFREIARTLFKILLLFFFLMLAFALVFYALMLN
QEEFERLDLSVIQIFVMMVGELNYQSNFLDIYLHNKFPFPFITFYMLVIFIIFMPILLMN
MMIGLAVGDIAEVQRSATLKRIAMQIELHTNLEEKMPYWLLKRVDQSSITIYPNRKCSKF
WSQGEANEVRTHLMTNSSTSTSVEAKLRKQKQRLKEISSVLEKQHDLMKLMIQKMEITSE
ADEHDGPTEVKGHRQMSNCGRAKCSKWIPLMKAIKNKNLNR
NT seq
3366 nt
NT seq
+upstream
nt +downstream
nt
atgcagctcaccaaggaagtggcacggcagaacagttcctataagtgtgtgattgaagat
gcaacatcatttcatcaactcactgcaaacacagacgtcatgctggcagctacaaacctg
tttgagtgggctcggggaggtgatgtgtcccagctgcagggcttggtgaggaggaaccca
ggagtactgagggaacaggatgactctggtgcctcactggtccaccacgctgctggtgca
ggaaacacccctgttatcaggttcatctgcagcatcacacacagagatgagtggaacctg
tatgatgacgaggggtctatgccgctgcattgggccgtggagaggaaccagccagagagc
tgcagggctctgttagagctgggggtcgaacccaacgtcctcaacaaggccttgatgtct
cctctacacctggcggtcagccatcaacacaaccacctggtcaagctcctgttgtcccac
tataagacagagtctaacctagaaggatgtctgggcaacactcctgtcatgttagcctgc
tccatcaacaacactgaggctctctccatactgctgaagcacggggcacagctcagtagt
cagaacaagctaggccacttcgccatccacacagctgccttcgcaggcgctaagaaagcc
atggaggtcatcctcaaagctggagaggagatgggtcattccatagaagaacacattaac
gtcctggataagtcctgcagtagtcctctgcacatggcggtcaggggtggaaatgtggac
gtcattaagttctgcatccagaaaggagctaagattgatcagcaacaggtggaccggtcc
acagctctacattttgcctgttcccagggagctacagaggcagttaaactgatgctgtcc
tcctacagcagactggacagcatcattaacctgcctgatggagcctgccagacaccttta
cacaggtcaaccatattcgatcacacggagttggcggagtacctcatttcaaagggtgca
gacattgactacatagactgtaagggtctttctcccctgctgctggctactaactgtgga
gcctggagatctgtggctcttctgctgtccaaaggtgccaacgtcaacataaaggacaag
tcaggatgtaacttccttcaccgggccatcctgcagcccaaaggcctaaagaacctcaca
ggagacatcttacagcacagcagtatgatggatctgttgagtactgaagacaacgagggc
tgtactcctctccactacgcctgcagactgggtatccacgaatcggtcaagaacatcttg
gttctacaggtctctctggaccgcaagtccaaggacaagaagtcagccctgcacttcgct
gcccagtatggtcgtattaacacctgccagcgtctgctggagaccatcacagactcccgc
ctgctgaacgagggggatgagagaggcttgactcccctacacctggcctctggaggtgga
cacgccaaagtggtggagctgctgcttcgtaaaggagctctctttcacagtgattacaaa
gggtggacttgtttacaccatgcggcggcagaggggtacacccagaccatgaagatcgtt
ctgggcaccaacatcaaactactggacaagctggatgaggatgggagcacagcactgcac
gtggcagccagggagggacaagtagctgcagtgagactgctgctgcagagaggggcggag
atcagcctcaacaagagccacgcctccttctttcacgaagcactgcaacacaggaggaag
gatgtggtcaatgccatcatcgacagtgacagatgtagtgacaccctgaggacgttcaaa
catgatgctggcaaacgttgtccagtgttggaactggttgacttgctgccagagtcttgc
aagcacctactggactgctgcatcagagagtcaacggatgacgacaacagtcctgactat
cacattgagtacaattttcagtggcttcaggcaccgatagcactaaagaaacacgcaaag
actgacgaaagcctgaaggtccagcccctcgccgctctgaatgcgatggtgaacaacaac
cgcatagagctccttacacaccccgtctgcaagaaatacctggagatgaagtgggtggcc
tacgggagcactgctcaccttctgaacctgtttgtgtacctgctgggtctgcttcctctc
acccacctcatagtgagcctgagacccagcctggactacaccggccctgacaacaccaca
gctgtcaccatggtgcccatttccttcagagagcaaaactccttcttgtccatttgcatg
gtgatggtactagtcatgaacatctactccatggggaaggaagtgatgcagatgtaccat
cagcgtttgagttacctgaaggacatctctaacattcaggactggttttcaatcatcctc
tctcttctcttcgtcatcgccctgttcttcaacgctgaggggtcctggcactggcaggct
ggggcactggccataatcatgtcatgggttaacttcctcctctatctccaaaggtttgag
cactttgggatctacgtggtgatgtttcgggagattgcaaggacgttgtttaaaatccta
ctgctattcttctttctgatgctggcctttgccttggtcttctatgccctcatgctcaac
caggaagagtttgagcgactggacttgtcagtgatccagatctttgtgatgatggtcggg
gaactgaattaccaaagcaattttctggacatatacctacacaacaaatttccatttccc
ttcatcactttctacatgttggttatatttatcatcttcatgccgatcctgctgatgaac
atgatgattggattggctgtcggtgacatcgctgaggtacagagaagtgccactctgaag
agaatagccatgcagattgaactccacaccaatctggaggagaagatgccatactggttg
ttgaagagagtggaccagtcatccatcaccatctatcccaaccgcaagtgctccaagttc
tggagtcaaggagaagccaacgaagtgcgaactcatctaatgaccaactcatcaacttca
acctctgtcgaagccaaactacgcaaacagaagcaaagactgaaggagatatccagtgtg
ctggagaagcagcacgacctgatgaagctgatgatccagaagatggagatcacctcggag
gcagacgaacatgacgggcccacagaggtcaaaggtcacaggcagatgtcaaactgtggt
cgagccaaatgctcgaagtggatcccgctgatgaaggcaatcaagaacaagaaccttaac
cggtga
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integrated database retrieval system
