Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139366975
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Entry
139366975 CDS
T10872
Name
(RefSeq) PAN2-PAN3 deadenylation complex subunit pan3-like isoform X1
KO
K12572
PAB-dependent poly(A)-specific ribonuclease subunit 3
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03018
RNA degradation
Brite
Messenger RNA biogenesis [BR:
ocla03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
139366975
mRNA degradation factors
3'-5' decay
Pan complex
139366975
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Ortholog
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Gene cluster
GFIT
Other DBs
NCBI-GeneID:
139366975
NCBI-ProteinID:
XP_070960891
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Position
15:16616798..16635522
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AA seq
827 aa
AA seq
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MNSGLPASAAPLGGVGIPCVKVKFCRYYAKDKTCFYGDECQFLHEEPSMASMSLHSGASP
VPLSMSGGAVTYPLSAPPACPVGVPNVPKKGDSLGPAGTVLEGQMLTIPGMEGGTLSDAN
LTNSYFSSSFIGVNGFGSPAESKYSIMQRITNSSSSPSLLDDGAKNFSHSAHDLFHGTLA
AGPGQSCGSMENSPWTTQSSFPLPLCPLPDPGNSPMSSLFSDFGALSISQRRKGPNPTAN
EFIPKGVPRMATMVQSSGPAFPSPLFPHLGLSSSTALAPGMSLSAGSTPLHSPKITPQTS
PAPRRRSHTPNPNNPNPANYMVSTSVSDQGAHIIQKETVGGTTYFYTDNTPAPMAGMVFP
TYHIYPPTAPHVAYMQPKANAPSFFMADELRQELINRHLITMAQLDQSENTGVPSEVDSY
HSLFPLEPVPPPNRLQKTSNFSYITSCYKAVNSKDDLPYCLRRIHGFRLVNTKCMMLVDM
WKKIQHSNAVTLREVFTTKAFGDHSLVFSYDFHAGAETMFSRHFNDPAADSYFTKRKWGQ
HEPTPPRQHAGLLPESLIWAYIVQLSSALRTIHTAGLACRVMDPSKILITGKTRLRVNCV
GVFDVLTFDNSQTNHVTLMPQYQQADLISLGKVVLALACNSLAGIQRENLQKAMELVSIN
YSSDLKNLILYLLTEQSRLRSVNDIMPMIGARFYTQLDASQMRNDVIEEDLAKEVQNGRL
FRLLAKLGTINERPEFQKDHTWSETGDRYLLKLFRDHLFHQVTEAGTPWIDLSHIVSCLN
KLDAGVPEKISLVSRDEKSVLVVTYSDLKRCFDNTFQELQQAAVGPL
NT seq
2484 nt
NT seq
+upstream
nt +downstream
nt
atgaacagtggactcccagcttcagctgctccactcgggggtgtcggaataccctgcgtc
aaggtgaagttctgccgatactacgcaaaggataagacttgcttttatggggacgagtgt
cagtttttgcatgaggagccgtctatggcaagcatgtcccttcacagtggagcaagtcct
gtccctttatccatgtctggaggagccgtgacgtatccgcttagtgcacccccggcctgc
ccggttggggtaccgaacgtccccaaaaagggcgactctctggggcctgcaggcacggtt
ctggagggacagatgttaaccatccctgggatggagggcgggaccctgagcgatgccaat
ctgaccaactcctacttcagcagcagcttcattggggtcaatggcttcgggagcccggca
gagtctaaatactctatcatgcagagaatcaccaacagcagcagttctcccagtctcctt
gacgacggtgccaagaacttcagccacagcgctcacgatctattccatggaaccctggca
gctggaccaggtcagagttgtgggtcgatggaaaactctccgtggacaacacagtcttca
ttccctctccctctatgtcctcttccagatccagggaattcccccatgtcttcactcttc
agtgactttggtgctctgagcatatcacaaaggagaaagggtcctaaccctacagccaat
gagttcatccctaagggggttccccgcatggccactatggtccagtccagtggtccggcc
ttcccatcgcccctcttcccccacctcggcctcagcagctccaccgccctcgcacctggg
atgtctctctctgcggggtccacccccctccactcccctaaaatcaccccccaaacctca
cctgcccctcgccggcgtagccacacccccaaccccaataaccccaacccagccaactac
atggtgtctaccagtgtgtctgaccagggggctcacatcatccagaaggagacggtgggg
gggaccacctatttctacacggataacacccccgctcccatggccgggatggtgtttcct
acctaccacatctacccccccactgctccccacgtggcctacatgcagcccaaagccaac
gccccgtccttcttcatggctgatgagctccgacaggagctgattaacagacatctgatt
accatggctcagcttgaccagtcagagaacacaggtgttccatctgaggtggatagctac
cacagcctgtttcccctggagcctgtcccccctcccaaccgcctgcagaagaccagcaac
ttcagctatatcacttcctgctacaaggctgtcaacagcaaggacgacctaccgtactgc
ctgaggaggatacatggtttcaggctggtgaacaccaagtgtatgatgctggtggacatg
tggaagaagatccagcactccaacgctgttaccctgagggaggtcttcaccaccaaggcc
tttggagatcactcgttggtgttctcctatgacttccatgcgggggcagagaccatgttc
agccggcacttcaacgaccccgcggccgactcctacttcaccaagaggaagtggggacag
cacgagcccactccaccgcggcagcacgcaggtctgctccccgagtctctgatctgggcc
tacatcgtccagctgagctcagccctcagaactatccacactgctggtctggcctgtagg
gtcatggaccccagcaagattctcatcaccggcaagaccaggttacgggtgaactgtgta
ggggtgtttgatgtcttaacgtttgacaacagtcagaccaaccatgtgaccctcatgcca
cagtaccagcaagcggacctgatatccctgggcaaggtggtgttggccctggcctgtaac
tctctggctggcattcagagagagaacctgcagaaggccatggagttggtgtctatcaac
tactcatcagacctcaagaacctcatcctgtatctgttgacagagcagtctaggctgcgc
agcgttaatgacatcatgcccatgattggagctcgcttctacacacagctggatgcatca
cagatgaggaatgatgtcatcgaggaggacctggcgaaggaggtccagaatggtcgtctc
ttccgtctgttggccaaactgggcaccatcaacgagagaccagagtttcagaaggaccat
acgtggtctgagacgggggaccggtacctactgaagctgttcagagaccacctgttccac
caggtgacagaggctggaaccccctggatagacctcagccacattgtttcctgcctcaac
aaactggacgcgggcgtgcctgagaagatcagcttagtgtctcgggatgagaagagtgtt
ctggtggtgacctactcggacctgaagcgctgcttcgacaatacctttcaggagctgcag
caggccgctgtcggaccgctgtag
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