Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139366993
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Entry
139366993 CDS
T10872
Name
(RefSeq) ranBP-type and C3HC4-type zinc finger-containing protein 1
KO
K10630
RanBP-type and C3HC4-type zinc finger-containing protein 1 [EC:
2.3.2.31
]
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04217
Necroptosis
ocla04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09140 Cellular Processes
09143 Cell growth and death
04217 Necroptosis
139366993
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
139366993
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ocla04121
]
139366993
Enzymes [BR:
ocla01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.31 RBR-type E3 ubiquitin transferase
139366993
Ubiquitin system [BR:
ocla04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
RBR proteins
139366993
Multi subunit type E3
LUBAC complex
139366993
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sharpin_PH
Zn_ribbon_RanBP
zf-RING_2
zf-RING_5
ubiquitin
IBR_1
zf-RING_11
Ubiquitin_2
Motif
Other DBs
NCBI-GeneID:
139366993
NCBI-ProteinID:
XP_070960932
LinkDB
All DBs
Position
15:complement(17632593..17644916)
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AA seq
710 aa
AA seq
DB search
MSLSSGGWTTHTPPPDPSSSIPGYGASQTGCHTVLMSVRVSVCHSGIRPLCLPGAGDESL
RLQLSMDPGKSGEFRLTLRDTSGTTGRSVSIAEFDLRSVHYEVKSPKCHELSLFMPPHDR
ISFNFRCEQEAQEWATVVISSLREAHRVSDSPPTDDRQLPLEALETPSSASLPRTEEMCA
ELTRAIEAGDIQAASIYAATLARQQAELKIQPSERSYGDTDLSLAVVVEDSSSSCCVTVK
VPPHATIAILKQQVFLEYGFHPRVQRWVIGQCLCADQRSLASYGVRRDGDTAFLYLLSAR
HARLTRQLLQQDQERALLTPATPPLETPSNGPTSQDWRGYSTLPPRLSHSSMGSNGAGPN
GAGAERLKISEIKDLINLEMPQLTEALTPKKSGPQGWACPSCTYINKPTRPGCEICSTDR
PESYTVPGSYKPDPLELHRIQQEKEAVRQYQQAREAERRENFARLVMLDGKDLVPNPDAV
DCRICYLDLQPGEGVLLRECLHCFCRDCLRSVVLMCEDPEVACPYRDDTYACDCTLQGRE
IRALVSEEEYERWLQRGLSVAESRCEGSYHCASPDCAGWCVYEDTVNVFHCPVCNKHNCL
LCKAIHEGMDCKQYQDDLTTRAENDSAARRTRDLLKTLVLSGEAMHCPQCGIIVQKKEGC
DWLRCTVCHSEICWVTRGPRWGPGGPGDTSGGCRCNINNQKCHPKCQNCH
NT seq
2133 nt
NT seq
+upstream
nt +downstream
nt
atgtcgctgagctcaggcgggtggactactcacactccaccgccggacccgtcctcatca
atccctggctatggggcctcacaaactggctgccatactgtcttgatgtcggtacgggta
tcagtttgccattctggtattcggccgctgtgtcttcctggggcaggtgatgagtcactc
cgtctacagctcagtatggaccccgggaagtccggggaattccgtctcacgctacgggac
accagcggaacaacgggtcggagtgtgtccattgcagagtttgacctgaggtcggtgcac
tatgaggtgaaatcgccaaaatgccacgagctgagtttgttcatgccccctcacgaccgc
atcagcttcaacttccgctgcgagcaggaggctcaggagtgggccaccgtggtgatatcg
tcactcagagaggcacacagggtgtccgacagccctcccactgatgaccgacaacttcct
ctggaggccttggagacacccagttccgcttccctaccacgcacagaggaaatgtgtgct
gagctgaccagggccatcgaggctggtgacatccaggcggcctccatctacgctgccacc
ctggctcgtcagcaggcagagctgaagatccagccctctgagaggagctacggagacaca
gatcttagcttggctgtagtggtcgaagattcttcgtcttcctgttgtgtcacagtgaaa
gtccccccccacgcgaccatcgcaatactcaagcagcaggtattcctggagtatggcttc
catccgcgggtgcagcgctgggtgattggccaatgtctgtgtgcagaccagcgctctctc
gcgtcctacggggtgcgtagggatggagacacggccttcctgtacctcctctctgcccgc
cacgcccgtctcacacggcagctgctccagcaggaccaggaaagagccctcctcaccccc
gctacccctcctcttgagaccccaagcaacggccccacatcccaggactggaggggttac
agcaccctgccccccagactgagccacagcagcatgggttcaaatggagcggggccaaat
ggagccggggcagagaggctgaaaatcagtgaaatcaaagacctcatcaacctggagatg
ccgcaactcaccgaagcacttacccctaagaaatcagggccacagggttgggcctgcccc
tcttgcacgtacataaacaagcccacacggcctggctgtgagatctgcagtacagaccgt
ccagagagctatactgttcctgggagctacaaaccagaccctctggagcttcaccgcata
cagcaggagaaagaagctgtccgacagtaccagcaggcgagggaagcagagcggagggag
aactttgcccggctggtgatgttggatggaaaggacctggtgcccaacccagatgctgtg
gactgtaggatctgttacctggacctgcagcctggggagggagtcctgctcagagagtgt
ctccactgtttctgcagagattgcctgcgctcagtagtcctgatgtgtgaggacccggag
gtggcctgtccgtaccgtgatgacacgtacgcctgtgactgcaccctgcaggggagagag
atcagagccttggtgtcggaagaggagtacgagcgctggctgcagagaggcttgtctgtg
gcagagtctcgttgtgagggcagttaccactgtgccagcccagactgtgccgggtggtgt
gtgtacgaggacaccgtcaacgtgttccactgcccagtctgcaacaagcacaactgcctg
ctctgcaaggcgattcatgaagggatggactgtaagcagtaccaggatgaccttacgacc
cgtgctgagaacgactcggcagcccgcagaaccagagatctgctcaagaccctggtcctc
tccggggaggccatgcactgcccacagtgcggcatcatcgtgcagaaaaaggagggctgt
gattggctgcgttgcactgtctgtcacagtgagatctgctgggtcaccaggggacctcgc
tgggggcccgggggtccgggagacaccagcggaggctgccgctgtaacatcaacaaccaa
aaatgtcacccaaagtgtcagaactgccactga
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