Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139367144
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Entry
139367144 CDS
T10872
Name
(RefSeq) protein scribble homolog isoform X1
KO
K16175
protein scribble
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
139367144
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Ortholog
Paralog
GFIT
Motif
Pfam:
PDZ
LRR_8
PDZ_6
LRR_14
LRR_4
PDZ_2
LRR_1
LRR_13
LRR_9
LRR_LRWD1
Spectrin-like_SYNRG
Motif
Other DBs
NCBI-GeneID:
139367144
NCBI-ProteinID:
XP_070961320
LinkDB
All DBs
Position
15:complement(28305448..28412941)
Genome browser
AA seq
2088 aa
AA seq
DB search
MLKCIPLWRCNRHVESVDKRHCNLQNVPDEIFRYSRSLEELLLDANQLRDLPKPFFRLLN
LRKLGLSDNEIQRLPPEVANFMQLVELDISRNDIPEIPESIKFCKALEIADFSGNPLSRL
PDGFTQLRGLAHLALNDVSLQTLPNDIGNLGNLVTLELRENLLKSLPTSLSFLVKLEQLD
LGSNELEVLPDTLGALPKLRELWLDRNQLSSLPPELGNLRRLVCLDMSENRLEELPSELS
GLLALTDLLLTQNLLEVVPDSIGSLKQLSILKVDQNRLTHLSDSIGECENLTELVLTENL
LQTLPRSLGKLKKLTNLNADRNRLGGVPDELGGCASLNVLSLRDNRVAKLPAQLADATEL
HVLDVAGNRLQNLPFALANLNLKAMWLAENQSQPMLKFQTEDEESTGEKVLTCYLLPQQP
SSSLENLLQNSVDDSWTDSNLNRVSVIQFQEETTKQEAEDDEAAAERRGLQRRATPHHSE
LKVMKKGIEERRNEAYTSRADGETESPGAEEKRLSDLSNQSHDSAASNSTASANSHEERR
GLMTTDLVGGRGPQEVEVLDEMEVEYIEPTVHFAEEPMYRGGDENGDDDEEGEDGVPHSY
EEEQQRPQFPTEKQRLIRKDTPHYKKHFKITKLPKPEAVAALLQGFSPDAHLAQHPASHH
TAPEEEEEEDEEEGEECMVTPQRHNRIEESELEDRSLLHANSSLQPVKGVSFDQVNNLLI
EPARIEEEEHNLTILRQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEDGPAARAGVKVG
DKLLEVNGVALQGAEHHTAVEALRSSGTAVSMSVIREHMVEPENAITTTPLRPEDDYFPR
ERRASGLPFCMEASSPAGPRHRRSTCLVRNDKGLGFSIAGGKGSTAYRTGDLGIYISRIA
EGGAAHRDSTLRVGDRVITINGVDMTEARHDQAVALLTGTSPTIALLVERDQAEPGTAGG
SPGLSRARAHSPPPPEPSDSPDQEEGNDDSPHGTHLSRPLQDEYPIEEVMLVKAGGPLGL
SIVGGSDHASHPFGVSEPGVFISKVIPHGLACQSGLRVGDRILEVNTIDLRHATHQEAVK
ALLSNKQEIRMLVRRDPSPPGMQEIVIQKQTGEKLGISIRGGAKGHAGNPFDATDEGIFI
SKVSSSGAAARDGRLLVGMRILEVSNHSLLGMTHTEAVRVLRAVGDTLFMLVCDGFDPGN
AAAIEASPGIIANPFAAGIVRKNSMESISSIDRDLSPEEMDILQKEVEMARETSQWEREE
VERMRLEREEATRLLEEETENLGTGPLNLDYRTLAALPTTALQKVNRFAPSVCVTAFMEA
PLQTQCSAPLEPLGFGLGQPSTSLYHVDPHALPQSCPTMITEAEHLYMSQHSPSPAITSF
NQEAARQEAPPTGEDEEEEILVDSQPINFSENPFLVANRKGKGRPPSECILSGPPMGYGS
GGKLQPWLFSKAPSTEPPRTDSPIRDAPYSPSTQPPSAHSSTSSLCAGRETRFASIHFPP
TALPAKNNSPLSPYETRPGSIQPLSRGGGRPSTSPGTPDGHSRDGHSSPNPFQHGPSPIN
SQTSLQPRAPSPDTIDEFSLNPKQAYKAFAAVPHSLAMLEPPLQDLYGQRNNIQSNLPSP
SLEPELNNEVFEDEVEGDGGLGGGLAAHVSPRPSLSSDRRDYMSLAAVPRLSRASMDMVV
KTPSPGGRDSPEQRSFRDRQKYFEIDMKQQTPDSKPKGRVSLVGADDLKKMREEEERRFE
QRAREYLMDDDDEEEDDLVTQMGVLKATGKVLLDGVEYKVEPVATPPRHYNTPPSYSATP
PSYCGSSGPSSVDGKGDSQRNSLEESFRLDQQRPNSMTGLIPVYPGESGAPIRTAKAERR
QQERLRMQSPELAPAGDKDLSPAEKRALEAEKRAMWRAARPYGLEEDVRQYEQDLAKRLY
QSRVRASQGTVPPPQPQNAAASSATSQLRMKSLEQDALKAQMVIAKSREGKKRGTLDQLA
ESPSPAPTPSPTPLEDFSPRGVTSPGRLSLSEKKFDYRQFAAIPSSKPVYDIQSPDTVDD
FQFIDDGSSNPVPAEVPTATSTLEEMALYRNKRKLRQGRRSLETAVPT
NT seq
6267 nt
NT seq
+upstream
nt +downstream
nt
atgctgaagtgtatccctttgtggcgctgtaaccgccacgtcgagtcggtggacaagcga
cattgcaatttgcaaaatgtccctgacgagatattccgctacagccgcagtctggaagag
cttctcctcgacgccaaccaactcagagatctacccaagcctttctttagacttctgaac
ctgcggaagctgggcctgagtgacaatgagatccagaggctccctcctgaggtggccaac
ttcatgcagctggtggagctcgacatctccagaaacgacattcctgagatccccgagagc
attaagttctgcaaggcgttggagattgcagacttcagtggaaaccccctctccaggttg
cctgatggtttcactcagctgcgagggctcgcccacctggccctcaacgatgtgtcactg
cagacactgcccaacgacataggaaacctgggcaacctggtgacgctggagctcagggag
aacctgctcaagtccctgcccacgtcgctctcttttctggtgaaactggaacagctggac
ctgggcagcaatgaactggaagtgttgccagacacacttggtgctctccctaagctacgg
gagctgtggttggaccgtaaccagctctcctcattgccaccagagctggggaacctgcgg
aggctggtgtgtctagacatgtcagagaaccgcctggaggagttgccctcggagctgagc
ggcctgctggccctcactgacctgctgctcacacaaaacctcctggaggtggtccctgac
agcattggctctctgaagcagctgtccatcttgaaagtggaccagaaccgactgacccac
ctgagcgactccataggggagtgtgagaacctgacggaactcgtgctgaccgagaacctc
ttacagactctgcctcgctcgctgggcaagctgaagaagctgaccaatctgaatgcggac
cgcaaccggctgggcggcgtgcccgatgagctgggcggctgcgccagcctcaacgtgctc
tccctcagggacaaccgggtggccaagctgcctgcccagctggccgacgctaccgagctc
cacgtgctagacgtggcagggaacaggttacagaacctcccgtttgccctggccaacctc
aacctgaaggccatgtggctggcagagaaccagtcccagcccatgctcaagttccagacg
gaggatgaggagagcaccggggagaaggtgctcacctgctacctgctaccccagcagcct
tcctctagcctggagaacctgctccagaacagtgtggacgacagctggacagacagcaac
ctgaaccgcgtgtctgtcatccagttccaggaggagaccaccaagcaggaggcggaggat
gacgaggcggccgcggagcgcaggggtctccagcggcgggcgacaccacaccacagtgag
ctgaaggtgatgaagaaagggattgaggagaggaggaacgaggcctacacttccagagcg
gatggagagacggagtcccctggtgctgaggagaagcggctgagcgatctgtccaatcag
agccacgactctgcggcgtccaacagcacggcctcggccaactcccacgaagagaggcgg
ggcttgatgaccacagacctggtgggtgggcgtgggccccaggaggtggaggtgctagat
gagatggaggtggagtacatagagcccacggtgcactttgcagaggagcccatgtaccgg
ggtggggatgagaatggtgacgacgatgaggagggcgaggatggggtcccacacagctac
gaagaggaacaacagaggccccagttccctacggagaagcagcgtctgatcaggaaggac
acgccgcactacaagaagcacttcaagatcaccaagctgccaaaaccggaggcggtggcc
gcgttactgcagggcttcagccccgacgctcacctggctcaacacccagcctcgcaccac
actgcccccgaggaggaagaggaggaggatgaggaggaaggggaggagtgtatggtaact
ccacagcgccacaacaggatagaagagtcagagctggaggataggagtctgcttcatgcc
aactcctccctgcagccggtcaagggggtgtcatttgatcaagtcaataatctgctgatt
gagcctgctcgaattgaggaggaagagcacaacctgaccattctacggcaaactgggggt
ctgggcatcagcatagccggaggaaagggatccacaccctacaagggggatgatgagggc
atcttcatctccagggtgtctgaggatggacctgcagcccgggctggggtcaaagtggga
gacaaacttctcgaggtgaacggcgtggccctccagggtgccgagcaccacacggcggtg
gaagccctgcgcagctcgggcaccgccgtctccatgagcgtcatccgggagcacatggtg
gagccggagaacgccatcaccaccacgccgctgaggcccgaggacgactacttcccccgg
gagagacgggccagcgggctgcccttctgcatggaggccagctcccccgcaggcccccga
cacaggcggtctacttgcctggtccgcaacgacaagggcctgggcttcagcatcgccggg
ggcaagggttccacagcctaccgcacgggggacttggggatctacatctcccgaatcgca
gagggaggggcggcccaccgagacagcacgctccgcgtcggggacagggtcatcacgatc
aatggtgtagacatgacagaggccaggcatgaccaggcagtagcgctgcttaccggcacc
tcccccaccatcgccctcctggtggagcgcgaccaggccgagccgggcaccgcagggggc
tccccgggcctgtcccgcgcccgtgcccactcccccccgcccccagagccctccgactcg
cccgatcaggaggagggcaacgacgactcgccccacgggacccacctgagccggccgctg
caggacgagtaccccatcgaggaagtgatgttggtgaaggcgggcggccctctgggactg
agcatcgtgggaggcagcgaccatgccagtcatccgttcggcgtcagcgagcctggtgtc
ttcatctcgaaggtgatcccacatggcttggcgtgtcagagtgggctgcgggtcggggac
aggatactggaggtgaacaccatcgacctgcgccacgccacccaccaggaggctgttaaa
gccctgctctccaacaaacaggagatccgcatgctggtgcgcagggacccctcaccgccg
gggatgcaggagatagtgatccagaagcagactggagagaagctgggcatcagcatacgt
ggcggtgccaaaggccacgctggcaaccctttcgacgccaccgatgagggcatcttcata
tccaaggtgagctccagtggtgcagcggccagagacggccgtctgctggtgggcatgcgg
atcctggaggtgagcaaccacagcctgctgggcatgacccacacggaggccgtgcgcgtg
ctccgcgccgtgggagacaccctgttcatgctggtgtgtgacggcttcgacccaggcaac
gctgccgccatagaggcgtcgccgggcatcattgccaacccgtttgcggcgggcatcgtg
cgtaagaacagcatggagagcatctcctctatagaccgagacctgagtccggaggagatg
gacatcctacagaaggaggtggagatggcgcgagagacgtcccagtgggagagagaagag
gtggagcgcatgcgcttggagcgtgaggaggctactcgcctgctagaagaggagaccgag
aacctgggcactggacctctgaatctggactaccggacgctggctgcactgcccaccacc
gctctgcagaaggtcaacaggttcgctccctctgtctgtgtgactgccttcatggaggcc
cccctgcagacccaatgttctgcccccttagagcccctgggctttggcctggggcagccc
tccacctccctctaccacgtggacccccatgctctgcctcagtcctgccccactatgatc
acagaggccgagcacctctacatgtcccagcactctcccagtcccgccatcacctccttc
aatcaagaagcagctagacaggaagcaccgcctaccggtgaagatgaagaggaggagatt
ctggtggactcccagccaattaacttcagcgagaaccccttcctggtggccaatcgcaag
ggaaagggccgccccccctcggagtgtatcctatcagggcctcccatgggctacgggagc
ggcggcaagttgcagccctggttgttcagcaaggcaccctccactgagccccccaggaca
gacagtcccattagagatgccccctactcacctagcacacaaccgcccagtgctcattcc
tccaccagttccctgtgtgcaggcagggagacccgcttcgcaagcattcatttccccccc
actgcactgcctgccaagaataactcgccattgagtccctatgagacgaggccgggttcc
atccagccactctcccgtggtggcgggcggccaagcacctcgccaggcactccggacggg
cacagcagagacgggcacagcagtcccaaccccttccagcatggcccctcccccatcaac
tcccagacctctctgcagcctcgtgccccctcccctgacacaatcgatgagttctccctg
aaccccaagcaggcatacaaggcgtttgccgccgtgcctcactcgctggccatgctggag
ccaccgctgcaggacctgtatggccagaggaacaacatccagtccaacctgccttctcct
tctctagagcctgagctgaacaacgaggtgtttgaggatgaggtagagggggacggagga
ctaggtggaggtctggcagcccacgtctctccccgaccctccctctcctctgaccgtcgg
gactatatgagtctggcagcagtgccacgcctctccagagcctcaatggacatggtcgta
aagactccatctcctgggggcagagacagcccagagcagcgctccttcagggacagacag
aagtactttgagatcgacatgaagcagcagacgcccgacagcaagcccaaaggccgcgtg
tccctggtgggagcagatgacctgaagaagatgagggaggaggaagagaggagatttgag
cagcgggcgcgggagtacctgatggatgacgatgatgaggaggaggacgacctggtgacg
cagatgggagtgttgaaggccacgggcaaggtgttgctggacggggtggagtacaaggtg
gagcctgtggccacgccccctaggcactataacacgccccccagctacagcgccacgccc
cctagctactgtggcagctcagggccctcgtcagtggatggtaaaggagactcccagagg
aattccttagaggagagcttcaggttggatcagcagcggcccaactccatgactggtctg
atcccagtgtaccctggagagtcgggggctcccatccggacggccaaggcagagcggagg
caacaggagcggctgaggatgcagagtccagagctggccccggccggagacaaggacctg
tcccccgccgagaaacgggctctggaggccgagaagagagccatgtggagggcagcaagg
ccctatggcctagaggaggatgttaggcagtatgagcaggacctggctaagaggctctac
cagtcgcgagtgagggcgtctcagggcaccgtgccgccccctcagccccaaaacgctgcc
gcttcctccgctacctcccagctcaggatgaagtctctggagcaggatgctctgaaggct
cagatggtcatcgctaagtctcgggagggaaagaagcgtggcacactagaccagctggcc
gagtcaccctcgcccgcccccacgccatcccccacccctctggaagatttcagtcccagg
ggagtgacgtcaccaggcagactgtccctgtcggaaaagaagtttgactaccgacagttt
gctgccattccttcttccaaacccgtatacgacatccagtcccctgacacggtcgacgac
tttcagttcattgacgacggctccagtaaccctgtgcccgctgaggtccccactgccacc
tcaacgctggaggagatggccctctacagaaacaagcgcaagctgaggcagggccgccgc
agcctggagaccgccgtgcccacataa
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