Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139367238
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Entry
139367238 CDS
T10872
Name
(RefSeq) zinc finger E-box-binding homeobox 1-like isoform X1
KO
K09299
zinc finger homeobox protein 1
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ocla03000
]
139367238
Transcription factors [BR:
ocla03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain ZF
139367238
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-H2C2_2
zf-C2H2
zf-C2H2_4
zf-C2H2_jaz
zf-Di19
zf-C2H2_15
Homeodomain
zf-met
zf-H2C2_5
Zn_SUZ12
zf-C2H2_6
Motif
Other DBs
NCBI-GeneID:
139367238
NCBI-ProteinID:
XP_070961570
LinkDB
All DBs
Position
15:37476079..37569919
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AA seq
1182 aa
AA seq
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MADGPRCKRRKQANPRRNNVTNYSNVVKAPGSDSDDEDKLHIVEEDGSLADGADCDSNVP
SEDHNGDRWDEVREECGSDGEDDGSTDALVEEILQQGDTTIIYPEAPEDEPRQGTPEASG
QDENGTPDAFSQLLTCPYCARGYKRYTSLKEHIKLRHEKSEDNFSCSQCSYTFAYRTQLE
RHMSAHKAGRDQRHMTQSGGNRKFKCTECEKAFKYKHHLKEHLRIHSGEKPYECSNCKKR
FSHSGSYSSHISSKKCIGVISAVNGRPLPAKASQCPSPAMPASPSSTTRTQTRDKPLQEQ
LPLNQIKSEPMDYEYKPMVVSPAAGATGVNGHGGGVFNGGAAAPLQGAMQAVMLPTMGLV
SPISINLADLQNVLKVAVDSNMIRQMLENNAKSAGTGMGATGVPHQQLISAISLPIMGQD
GSATKIIINYSLDPSQTQTQLTAQNLKKEPPTLATTPGQAATEPSSKTQQKLPEDLTVSR
PPRSKEEKMEEETTKTCLLCNECPNGLDALHTLKHCKKASGLRINGDKSKSAIDSLLSEG
FGDQPKNLLSLLKAYFALNVEPTKEELSKISDSVSLPADIVKKWFDKMQSGQVSLGAPTP
PSEEEGPLSECHGAIVVSPKVRSEQNTESPTLMQSSPAEATPAEVNGSGPCPASPTPLNL
TTGGAVPAKPSSSDSTEVPLDLSLPKPLREETAATAASYQATVYSHQDEPLNLTKTCTTK
KELPLSAGPSGHHMTSQTLSFYTAGPQSANPISIMTTQLPSGTIYAITDQGSTGVPCLRA
LTTNNNQTILIPQLAYTYTTTATASSPAGTETQEKTTLQINGIKEERQDTSSEGVYTMEE
QNDSDTTPSRNKMRKTESGLYACDLCDKIFQKSSSLLRHKYEHTGKRPHECGICRKAFKH
KHHLIEHMRLHSGEKPYQCDKCGKRFSHSGSYSQHMNHRYSYCKKEAQGGGQGGVGEEVL
EIQSPVGLGLGGEQPEQSDSRPTSSPPSHLDSDERGSSTREEEEESDEEDMETVAGEAVE
GDPDSVLDMDDIQVVRIGDEGGEEEEEEEREEEGEDTGQEGGEQGVKRIVVGGEEEEGEE
EEEGLVGVEVKEEQEEKEVTGEKAHTRQEEVKENREKKEEHGGEKEQDEKEVEEEQSEQA
QEEVTEETMDTEEAVTSEEKEESGEVMKENEGETNGNTVSED
NT seq
3549 nt
NT seq
+upstream
nt +downstream
nt
atggcggatggccccaggtgtaagcgcagaaagcaggcaaatccgaggaggaataacgta
accaactacagtaatgtagtgaaggccccaggctcagattcagatgatgaggacaagctg
cacatcgtggaggaggacgggagtctggcagacggggctgactgtgacagcaacgtaccc
agtgaagatcacaacggagaccgctgggatgaagtgagggaggagtgtggttctgatggg
gaggatgacggcagtacagatgctctggtggaggagatactgcagcagggagacacgacc
atcatctacccagaagcccctgaggacgagccccgccaggggacgcccgaggccagcgga
caagacgagaatggcactccggatgcgttctcacagctcctcacctgtccctactgtgcc
cgcggctacaagcgctacacgtccctgaaggagcacatcaagctgcgccacgagaagagc
gaggacaacttcagctgctcccagtgcagctacaccttcgcctaccgcactcagctggag
agacacatgagtgcccacaaagctgggagagaccagaggcacatgacacagtcggggggc
aaccgaaaattcaagtgcactgaatgtgaaaaagcatttaagtacaagcatcacctgaag
gagcacctacgcatccacagcggagagaagccatacgagtgctccaactgtaagaagcgt
ttctcccactccggctcctacagctcccacatcagcagtaagaagtgcatcggcgtgatc
tcagcagtcaacggccgacccctgcccgccaaggcctcccaatgcccatccccagccatg
cccgcctcgccctcctccaccacacgcacccagacccgagacaaacccttgcaggaacag
ctacccctcaaccagatcaagagcgagccaatggactacgagtacaagcccatggtagtg
tctccagcagcgggggcaacaggagtgaacggtcacggaggaggggtgttcaacgggggt
gcggctgccccactgcagggcgcgatgcaggcggtgatgctccccaccatgggcctggtc
tctccgatcagcatcaacctggcagacctacagaacgtcttgaaggtggcggtggacagt
aacatgatcagacagatgttggagaacaatgctaagtcagcggggactggcatgggggcg
acaggtgttcctcaccagcagctcatctcagccatcagtctgcccattatgggtcaggac
ggcagcgccaccaagatcatcatcaactacagcctggaccccagccagacacagacccag
ctcactgcccagaacctgaaaaaggagcccccgaccctggctacaacaccaggccaggct
gccacagagccctccagcaagacccagcagaaactcccagaggacctgacagttagcagg
ccccccaggagcaaagaggagaagatggaagaggagactactaagacctgcctgctttgt
aatgagtgccccaatggtctggacgctctccacacactcaagcactgtaagaaagcctca
ggcctcaggatcaatggggacaaatcaaagtctgccatcgattcattattgtctgagggg
ttcggggaccagcccaagaaccttctgtccctcctcaaggcctacttcgccttaaatgtt
gagcccaccaaggaggagctcagcaaaatctccgactcggtcagcctgcctgccgacata
gtcaagaagtggtttgacaagatgcagagtggtcaggtctcattaggggccccgacccct
ccgtctgaggaagaagggcccttgtctgagtgtcatggggccattgttgtgtcccctaaa
gtaagatcagagcagaacacagagagccccaccctgatgcagtccagcccagctgaggcc
actccggctgaagttaacggctctgggccctgcccggcctcccctacaccactaaacctg
accaccgggggggccgtcccagccaaaccctcctcctcagacagcacggaggtccccctg
gacctgtcgctaccaaagcccctccgagaggagaccgctgccaccgcggcctcttaccaa
gccactgtttactcccatcaggacgaacccctgaacttgacgaagacttgcacaaccaag
aaagaacttccgctctctgccggcccctcaggccaccacatgactagccaaaccttgtcc
ttttacaccgccggcccacaaagtgccaaccccatcagcatcatgaccactcagctgccc
agcgggaccatctatgccatcactgatcagggcagcacgggtgtgccctgcctccgggcg
ctcaccaccaataacaaccagactatcctcatcccacagttggcctacacctataccact
acagctacagccagcagccctgcagggacagagacacaggagaagaccacactgcagatc
aacggcatcaaggaggagcgtcaggacacaagctcagagggcgtgtataccatggaggag
cagaatgactcagacaccaccccttccaggaataagatgaggaagacggagagtgggttg
tacgcctgcgacctgtgtgacaagatcttccagaagagcagctctctgctccgacataaa
tacgaacacacaggcaagagaccccacgagtgtggcatctgcaggaaggccttcaaacac
aagcaccacttgatagaacacatgcgtctccactccggagagaaaccctaccagtgcgac
aagtgtggcaagcgcttctctcactcaggctcttactcccagcacatgaaccaccgctac
tcctattgcaagaaggaggcgcagggaggaggtcagggaggtgtaggggaggaagtgctg
gagattcagagccccgtggggttgggcctgggaggggagcagccggagcagtcagacagc
aggcccacctcctcccctccctcccacctggactcggacgagcgagggagcagcaccaga
gaggaggaggaggagagtgatgaggaggacatggagacagtggcaggggaggcggtggag
ggagatccggacagcgttctggatatggatgatatacaagtggtacggataggagatgag
ggaggggaagaggaggaggaggaggagagagaggaggagggggaagacactggtcaggag
gggggagagcaaggagtgaagagaatagtggtagggggtgaagaggaggaaggagaagaa
gaagaagaggggttagtgggggttgaagtaaaggaagagcaggaagaaaaggaggttaca
ggggaaaaggcacatacaaggcaagaggaggtgaaggagaaccgtgagaaaaaggaggaa
catggaggagagaaggagcaggatgagaaggaagtggaggaggagcagtcagagcaggct
caggaggaggtgacggaggagacaatggacacagaggaagcggtgacctcagaggagaag
gaagaatcaggggaggtcatgaaagagaatgaaggtgaaacaaacgggaacactgtttca
gaagactag
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