Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139367447
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Entry
139367447 CDS
T10872
Name
(RefSeq) endothelial PAS domain-containing protein 1-like
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04137
Mitophagy - animal
ocla04140
Autophagy - animal
ocla04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
139367447
04137 Mitophagy - animal
139367447
04148 Efferocytosis
139367447
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ocla03000
]
139367447
Transcription factors [BR:
ocla03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
139367447
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Paralog
GFIT
Motif
Pfam:
PAS_11
PAS_3
bHLH_HIF1A
PAS
PAS_4
PAS_9
Motif
Other DBs
NCBI-GeneID:
139367447
NCBI-ProteinID:
XP_070961758
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Position
16:11120047..11125929
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AA seq
389 aa
AA seq
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MTPERERRRIMSCEAARARRRAESQVLIDMSQLLPLPSSLRPQLDKPSIIRLTISYLRIH
TLLSGFADRQTWERRDEEGERETREEGERETRERREEGGRERWAEGNREAGDRELGERRE
ERKKEMGETDLYLRILGGFVVVVTTEGDMIYLSDNIREYMGLTQVELMGHSIYDFTHPSD
HKEIRDNLDLTAGRSGCGGLRDFLMRMKCTVTHRGRTVNLRSAGWRVLQCRGCLKVCVSG
PSLTCVLFTCQPLSLTHTLLHTHTFTSHHSMDMRFTYCDQRVTGLLSYRPEELLGVSMYD
LCHTLDLHTLTKSHLNLCSKGQSVSGVYRVLVRGGGYMWAETHSAVISKPRPTQPHQSRP
SPPLFVACVTYILSGVEEPTQLLSLGQMN
NT seq
1170 nt
NT seq
+upstream
nt +downstream
nt
atgaccccggagagagagaggaggaggataatgagttgtgaagcagcgagggctaggcgg
agagcagagtctcaggtgttgattgacatgtctcaactcctccccctcccttcctccctc
cgcccacagctagacaaaccctccatcatacgactaaccatcagctacctacgcatacac
acactgctctctggcttcgctgaccgacagacgtgggagaggagggacgaggagggagag
agggaaacgagggaggagggagagagggaaacgagggagaggagggaggagggagggaga
gagaggtgggcagagggaaatagggaggcgggagacagggagctcggggagaggagggag
gagcgaaagaaggagatgggggagacagatctatacctgaggattctgggtggctttgtc
gtcgtggtaacgacagaaggagacatgatctacctgtcagataacatcagagaatacatg
ggtttaactcaggtggagttgatggggcatagcatatatgatttcacacacccctctgac
cataaggaaatcagagacaaccttgacctcactgcagggcggagcgggtgtggaggactg
agagactttctgatgaggatgaagtgtacagtgactcacagaggaagaactgtcaacctc
agatcagccggctggagggtgctgcagtgtcgcgggtgtttgaaggtgtgtgtgtcagga
ccctctcttacttgtgtgctcttcacctgccagcccctgtccctcacacacacactccta
cacacacacaccttcaccagccatcacagcatggacatgaggttcacttactgtgaccaa
agggtgactgggttgttaagttatcgtccagaggagttgctgggtgtctctatgtatgat
ctgtgtcacactctggacttacacactctgaccaaaagccacctgaacctgtgttctaag
ggtcagtcagtgagtggggtgtacagggtgttggttagagggggagggtacatgtgggca
gagactcacagtgctgtcatctccaaaccccgcccaacgcagccacaccaatctagaccc
tcaccgccactcttcgtcgcttgtgtcacatacatcctcagtggtgttgaagagccaact
cagcttctgtctctgggccagatgaactga
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