Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139367675
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Entry
139367675 CDS
T10872
Name
(RefSeq) E3 ubiquitin/ISG15 ligase TRIM25-like
KO
K10652
tripartite motif-containing protein 25 [EC:
2.3.2.27
]
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
139367675
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ocla04121
]
139367675
Enzymes [BR:
ocla01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
139367675
Ubiquitin system [BR:
ocla04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
139367675
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRY
SPRY
zf-RING_UBOX
zf-C3HC4_4
zf-C3HC4
zf-B_box
zf-C3HC4_3
zf-RING_2
RING_XB3-XBAT31
zf-RING_5
zf-C3HC4_2
zf-UBR
zf-RING_10
ANCHR-like_BBOX
U-box
zf_RING_Vps8
Motif
Other DBs
NCBI-GeneID:
139367675
NCBI-ProteinID:
XP_070962059
LinkDB
All DBs
Position
16:48668409..48670838
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AA seq
541 aa
AA seq
DB search
MPLSKPKELLEHELSCPICLQLYTDPVYLPCGHNYCLACIQKATDVSGGEKSLPQCPECR
EEYGGTETLQRNFKLCGIIEGYRAVAPADHLKREPLKVRCDHCLDLETLAIKTCLKCEVS
LCARHLQHHTERGSFRTHDLVEPQTELGQRGCAIHGRLLEYFCASDMTSLCANCFIEGTH
QNHDVLTFEAAEEEMRRALEIQSKAVANRLQLTETLLQRAAEDQGTSEAVGDKLLSKSVD
LMDNMASLVSRYKDRMSLLLEKERGRQRESWQSDLGLLEEQKQQLMEAHQRTTEALTETE
KCLFINRFLLIEPQLREVVTGTVARVPNKVPLNPKRLQASLRMEDFRAEMARLLQSVHVL
LNPLELTFNLSTAHTSLLLSNDLQTVKYSGTKQAYADNPERFSTAPQVLCSQGFTSGEHI
WVVEVGDQSMWSMGLCYKSMPRKGDHSRLGHNPASWRLQWKNKKLTACHASSNVALAEMA
NQPLRVEVALDYEGGTLIFHSTKDRREHLHTFRAVFREAVYPAFSILSTREQSWITLQSG
V
NT seq
1626 nt
NT seq
+upstream
nt +downstream
nt
atgcctctgtctaaaccaaaggagctgttagaacatgagctcagctgccctatctgcctg
cagctctacacggatcctgtgtatctgccctgtggccataactactgcctggcctgcatt
cagaaggctacagatgtcagcggtggagagaagagcctgcctcaatgccctgagtgcaga
gaagagtacggcggtacagagacactgcaaaggaacttcaagctctgcggcatcatagaa
ggctacagggccgttgcgccagcagaccacctgaagagagagccgctgaaggtgcgctgt
gaccactgcctggacttagagacactggccatcaagacctgcctaaagtgtgaggtgtcc
ctgtgtgccaggcacctgcagcaccacactgagagagggtccttcaggacccatgacttg
gtggagccccagactgagctgggccagagaggttgtgccatccacggacgcctgctggag
tacttctgcgccagcgacatgacctctctctgcgccaactgcttcattgagggcacccac
cagaatcatgatgtcctgacgttcgaggcagccgaggaagaaatgaggcgggccctggag
attcagagcaaggcggtggccaacaggctgcagctgaccgagaccctgctacagagggct
gctgaggaccagggcacctctgaggctgtgggagacaagctgctgtccaagtctgtggat
ttgatggacaacatggccagcctggtgagcaggtacaaagacaggatgagcctgctgctg
gaaaaggagagaggccgtcagagggagagctggcagagtgacctggggcttctagaagaa
cagaagcagcagctgatggaggcccaccagcgcaccactgaggccctcacagagacagag
aagtgtctgttcatcaacaggttcctgctaattgagccccagctcagggaggtcgtgacg
ggtaccgtggccagagtgcccaacaaggtccctctgaaccccaaacggctccaggccagc
cttaggatggaggacttcagggcagagatggctcggctcctccagtctgtccacgtcctg
ctaaaccctctggagctgacctttaacctcagcacagcccacaccagcctgctgctctcc
aacgacctgcagacagtcaagtacagcggtaccaagcaggcctacgctgataacccagag
aggttcagtaccgcaccccaggtcctgtgctcccagggcttcaccagtggggagcacatc
tgggtggtggaggtgggcgaccagagcatgtggtcaatgggcttgtgctacaagagcatg
cccaggaagggtgaccacagccggctggggcataacccggcctcctggcgtttgcagtgg
aagaacaagaagctgacggcgtgccatgcctcctcaaacgtggcgctggcggagatggcc
aatcagccactgagggtggaggtggctctggactatgaggggggaacactaatcttccac
agcaccaaggaccgtcgggaacatctgcacacgttcagggctgtgttcagagaggctgtg
taccctgcgttcagcatcctctccaccagagaacagtcctggatcacgctacagagtgga
gtgtaa
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