Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139367855
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Entry
139367855 CDS
T10872
Name
(RefSeq) nidogen-1
KO
K06826
nidogen (entactin)
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
139367855
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
ocla04990
]
139367855
Domain-containing proteins not elsewhere classified [BR:
ocla04990
]
EGF-like domain-containing proteins
cEGF domain-containing proteins
139367855
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
G2F
NIDO
Ldl_recept_b
EGF_3
cEGF
Thyroglobulin_1
EGF_CA
FXa_inhibition
SGL
EGF
Plasmod_Pvs28
hEGF
Motif
Other DBs
NCBI-GeneID:
139367855
NCBI-ProteinID:
XP_070962289
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Position
16:1055632..1130336
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AA seq
1217 aa
AA seq
DB search
MGQQGKGWLFYATLLLGWAVSVHGLTRAEFFPFGKNTGDHVLEQGNDLSQQLALDKPVLF
YDGKFDNIFINTNGFVAMAQPSAESTYLGKMPAGFGMIAALHGDLDTGDGVGKVYYRQDA
SPATLRQAAEQINRAFPEDDEVEPEHAVVVTWVDVASRQHHDHSRGDGLEKQRNSFQLVI
ASAETTSYAILLYPRKGMQFASTAVGGSSQAMQAGFSKGLVNYLVFSTRQGPYYRITTER
ETSVRALAEETNSGKRGVWVYEIGTSPYFTSVAPGEVTDLPPDTGLESRVSEKATSKRYP
GGGQQVTYSPYEPEEEVYRKEQPHQGPHHGGQFTVHTVQYQPQVVVVDDGDINVDVFSYN
SETCANNRNKCSTFADCKDYASGYCCHCRPGYYGNGIQCVSEGKPQRMNGKVNGRVYVGN
SPSPVEFNSNDLHSYVVANDGRAYVAISTIPARLGPSLQPLSALGGVIGWAFALEQPGYK
NGFSIIGGEFTCQAEVTFLPAQEKLTIKQVFSGIDEHDHLVVSTTLEGRVPEVLRGSTVQ
IEPYSEIYQYSSNLITSSSTRDYTVSLDDGSAETRTYQWRQTITFQSCPNDEAARAVLPT
QMLSVDQVFVMYDSNNELIRYAMSNKIGDVNGGQQKEENSCFTGRHGCDTNAVCRPEQGT
QFTCQCAAGFTGDGRSCYDIDECREIPLACGEHSVCNNQPGTFRCECNDGYQFASDGHTC
IGVDRPVDHCAAGSHDCDITERAHCSYSGGSSYICSCWPGFQGHGRVCQDIDECQSARCH
QKAVCYNTQGSFTCQCRPGYYGDGFYCSSEHTKSQCETHRDRLLGSTEYGPQPVPGQYVP
TCDSQGAYEASQCHGSIGHCWCVDRNGLEIPGTRTGPGRGRPLCIEQGPTVRPAVGPTPR
PDVYPLPPGTHLLFAQSGRIEFVPLEGYNMKKTEAKTVLHLPEKVIIGVAYDCVEKMVYW
TDITSPSISKANLQGGGAIPVIRSDLESPEGIAIDHLGRTLFWTDSMKDRIEVASLDGTK
RRVLIDTNLVNPRAIIVDPVNGNMYWADWNRDAPKIETSAMDGTNRRVLVKDDLGLPNGL
TYDPQSSQLCWADAGTHMIECMNPVQGDRRKAMGEIQYPFGITSHGKNIYYTDWRRDAVI
MVDRQAGTETDVFLPQKQTRLYGITTAYAQCPSGKNYCAVNNGGCTHLCLATPRGRSCLC
PNNALGVSCVESEGSRF
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
atgggacagcaggggaaaggatggctgttctacgcgacccttcttctggggtgggcagtg
tctgtgcatggtctgacccgggcagagttcttcccgttcggcaaaaacactggagaccac
gttctggaacaggggaatgacctgtcgcaacaactagcgctggataaacccgttttattc
tacgatggaaagttcgataacatctttatcaacaccaatgggtttgttgccatggcacag
cccagtgctgagtccacataccttggtaagatgcccgccgggttcggcatgatcgcggcc
ctgcacggcgacctggatactggtgacggcgtgggtaaggtgtactaccgtcaggatgcc
agcccagccaccctgcggcaggctgcagagcagattaacagggcttttccagaggacgat
gaggtggagccggaacacgcggtggtcgtcacctgggtagatgtggcttccaggcaacac
catgaccacagcagaggagacggactggagaaacagaggaatagcttccagctggtgata
gcgtcagctgagacgacctcctatgccatcctgctttaccccaggaaggggatgcagttt
gcctccacagctgtaggaggcagtagtcaggccatgcaggcgggcttcagtaaagggctg
gtcaactacctggtgtttagcacccgacagggaccgtactaccgcatcaccaccgagagg
gagacctctgtcagggcgctagcagaggagaccaactcaggtaagcgaggtgtgtgggtg
tacgagattgggacttccccttacttcaccagtgtggccccaggagaggtgacagacctg
cccccagacacaggcctggagtcaagggtctcggagaaggctacctcaaagaggtatcct
ggaggagggcaacaagtgacgtattctccctacgaaccagaggaggaggtgtatcgcaag
gagcagcctcaccagggacctcaccacgggggccagttcacagtccacacggtccagtac
cagcctcaggtggtggtagtagatgatggagacatcaacgtggatgtgttctcctacaac
tctgagacatgtgccaacaacagaaataagtgttccaccttcgccgactgtaaagattac
gccagcggttactgttgtcactgccggcccggctactatggcaacggaatacagtgtgtg
tcagagggtaagccccagaggatgaacggcaaggtgaatggcagggtgtacgtgggcaac
tctccgtctcccgtcgagttcaacagcaacgacctgcactcgtacgtggtagccaatgac
gggcgagcatacgtggccatcagcaccatccctgccaggctaggcccctccctccagccc
ctgtcagccctgggaggagtcatcggatgggccttcgccctggagcagcctggatacaag
aacggattcagcatcatcggtggtgagtttacgtgtcaggctgaggtgaccttcctacca
gcccaggagaagctgaccatcaaacaggtgttcagtggaatagatgagcatgatcacctg
gtggtcagtaccactctggagggacgtgtccccgaagtcctccgaggatccactgtccag
atagaaccctactctgagatctaccagtacagctccaacctgatcacgtcttcctctaca
agggactacactgtgagtctggatgatggctctgctgagaccaggacttaccagtggaga
cagaccatcaccttccagagctgtccaaatgacgaggctgcaagggccgtgcttcccaca
cagatgctgagtgtggaccaggtgtttgtgatgtacgactccaacaacgagctgatccga
tacgccatgagcaacaaaatcggtgatgtcaacggaggccagcagaaagaggaaaattcc
tgtttcactgggagacacggttgtgacaccaacgctgtctgtagacccgaacagggaaca
cagttcacctgccagtgtgctgctggcttcactggagacggacgctcttgttacgatatt
gatgagtgtagagagatccctctggcctgtggagaacactcagtctgcaacaaccagccc
ggaaccttccgctgtgagtgtaatgatggataccagttcgccagcgacgggcacacctgc
ataggagtggaccgtccagtagaccactgcgcggccggcagccatgactgtgacatcacg
gagcgcgctcactgcagctacagtggaggatcctcttatatctgctcctgttggcctggg
tttcagggacacggacgggtctgccaagatattgatgagtgccagtctgccaggtgccac
cagaaggctgtgtgttataacacccaggggtcctttacctgccagtgcaggccaggttac
tatggtgacggcttctactgctcctcagagcatacgaagtcgcagtgtgagacccacagg
gaccgtctcctaggctctacagagtacgggccccagccggtgcctggtcagtacgtgcct
acctgtgacagccagggagcctacgaggcctcccagtgccacggttccatcggacattgt
tggtgtgttgaccgtaacggactggagatcccaggaacacgcactgggcccggcagaggc
agaccactgtgtatagaacaaggaccaacagttcgtcccgcagtaggccctactcccagg
ccagatgtttaccctctaccccccggcacacacctgctctttgctcagagtggacgcatc
gagtttgtcccattggagggctacaacatgaagaagacagaggcaaagactgtcctgcat
ctaccggagaaggtgatcatcggggtggcctatgactgtgtggagaagatggtgtactgg
acagacatcacatccccctctatcagcaaggccaacctgcagggaggaggagccatccct
gtcatcagatcagatctggagagtccagaagggatcgctatagaccatctgggtcgtacc
ctgttctggacagattctatgaaggaccgcatcgaggtggcctctctggatgggaccaag
cgacgtgtcctcatcgacacaaacttggtcaacccccgagccatcatcgttgaccctgtc
aatggcaacatgtactgggcagactggaaccgtgatgctcctaaaatcgagacttctgcc
atggatgggaccaacaggagagttctggtgaaggatgacctggggctacctaacggactc
acctacgacccgcagagctctcagctgtgctgggccgatgcaggaacccacatgatcgag
tgtatgaacccagtgcagggagacaggaggaaggccatgggggagatccagtacccattt
ggaatcacctcccatgggaagaacatctactacactgactggaggagggatgcagtgatc
atggtggatcgtcaagctgggacggaaacggacgtgttcctgcctcagaaacagaccagg
ctatacggaatcaccacggcatacgctcagtgcccctcaggtaaaaactactgtgccgtg
aacaacggaggatgcacacatctatgtttggccacacccagaggtcgctcctgtctgtgt
cccaacaatgcactgggtgtcagctgtgtggagagcgaggggagcaggttttga
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