Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139367917
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Entry
139367917 CDS
T10872
Name
(RefSeq) integrin beta-4-like isoform X1
KO
K06525
integrin beta 4
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04382
Cornified envelope formation
ocla04510
Focal adhesion
ocla04512
ECM-receptor interaction
ocla04810
Regulation of actin cytoskeleton
ocla04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
139367917
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
139367917
09142 Cell motility
04820 Cytoskeleton in muscle cells
139367917
04810 Regulation of actin cytoskeleton
139367917
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
139367917
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ocla04147
]
139367917
04515 Cell adhesion molecules [BR:
ocla04515
]
139367917
04090 CD molecules [BR:
ocla04090
]
139367917
Exosome [BR:
ocla04147
]
Exosomal proteins
Exosomal proteins of colorectal cancer cells
139367917
Exosomal proteins of bladder cancer cells
139367917
Cell adhesion molecules [BR:
ocla04515
]
Integrins
Integrin beta subunits
139367917
CD molecules [BR:
ocla04090
]
Proteins
139367917
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Integrin_beta
fn3
Calx-beta
Integrin_B_tail
Pur_ac_phosph_N
PSI_integrin
Ig_DSCAM-DSCAML_C
EGF_Teneurin
I-EGF_1
EGF_2
EGF_integrin
EGF_TEN
Motif
Other DBs
NCBI-GeneID:
139367917
NCBI-ProteinID:
XP_070962404
LinkDB
All DBs
Position
16:8341296..8372026
Genome browser
AA seq
2039 aa
AA seq
DB search
MGRWTLHFLVGVVLAVLTASSYAEKVNHCLAARANTCSACIQSGKGCAYCPDEIFDGPRC
DLLENIIDHGCNGAVTAEGSMSMERNQKIDMLMKRSQVAPQDMSMTLLPGEEREIEMEVF
EPAKGPLDLYILMDFSNSMKDDLDNLKRMGAELADLVGKLSDDYTIGFGKFVDKVVEPQT
DMRPIKLAQPWPNSDPPFSFRNVITLTPDLQSFTQKLQKERISGNLDAPEGGFDAILQAT
VCGEKIGWRDHATHLLVFSTESAFHYESDGANVLAGIMPRNDEQCHLDPDGKYTEDTRQD
YPSVPTLVRLLGKHNIIPIFAVTNHSFTYYEKLHEYFPIAELGLLQEDSANILNILEKAF
ENIRSKISIRAEDRPKAIEAQVLSYSGSVAQAGTFKVKPGQIGKFKVRVKASEMVGEQHV
CSLEQGDKKGKMRVKPTTFSTALNINAEVLCKTCDCEKNPFRNAVRCTGHGDLVCGKCKC
NDGWLGPFCNCSASASTDPGTSCRGPGVEEPCSGRGDCLCGACVCYNTDQYEGSLCQFDK
SQCQRYGGFLCNDRGRCFMGQCACAEGWEGSACECPMSNQTCLDTNGGVCNGRGVCKCGR
CECQDSGLAMTPTCEANFQAQLGMCEDKRSCVQCQAWKTGEKKDSDQCDQCQFKVVMVEE
LKENKEVIEACSFRDEDDDCTYHYTVDYPEDQTVKDLEVQVLKKKDCPPAGFLWLIPLIM
FLMLLLGLLSLCCWKYCACCKSCLALLPCCGRGRMVGFKENQYMLRQSMLTSDHLDTPLV
RTGPPKSTDVVRWKITDNVHRSPNHPLAQVQPNPKETIQFPLSLRLNRLFTDSLSHSDAR
DTELLRREVDDNLNEVYKQVPGTQRVQNTTFRLQRNAGKRADHAIVDTVLSAPRSSYPNI
VKLTEKNVQSGNFQDLKVVPGYYTVATDREAAGAVEFQEGVETVDVHVPLFVKEEDDDKK
QLQVEAVDVPLGIAEIGKRFVSITIIKEHAKSVMSFLQPSYTYSRQDKVANIPITREIIE
DGHAQVSYRTRDLTAKDKKDYVTVDGELSYGPGETQQTVPVRLLEMGEGDGLLKDTQVKQ
FVMDLSNPRQGAKLGRYPRTTVTITDKPEPSVVMFMKSTQNFSTADPTYSIPVVRTRNKE
GPATVHWRTRNAKRFELSGPLKFGPGETEKNIVIDPRSHPGPVKPESFQLELFDPSTKAV
VGERKTTMVTITDGGLPENAQMEKSAGFINQTATSPGGRLNSPTNVKAKATGPRSIRLNW
DPLGKSLGYKVKYWIYGDPEADAPPAMNVKTNHADLTNLYPYCDYETKVCGYNALGDGNY
SDMVPCKTLEDVPSEPGRLAFNVISPTVTQVSWAEPAETNGVITAYEVLYTPINDDTKPM
GAAKKVKIDNPKKRMLLIENLQSAQTYCYQVRAKNSVGWGPFKEATINLASQPTRPMSIP
IIPDIPIVDAEAGDEYDGYLMYSSEVMRSPTDSKRPSVSDEEPINGRLEQNFLFPGGNNS
MSRSTNMSSSSYSQVSPMSTLSSSHRGGAGGSMSMESTTTYLSGQGGNSLSRTQVIGGGT
RTENVVMRKRSENRGYYEYDDNIRDSIIIGDLSSGLSGYTDGQSTYGFSPTQTQSQYDYG
MSQAFRARTQSEDVNDALLNLDRVLQDARLAPGVPDTPTRLVFSALGPTALKISWQEPHC
DRDVLGYCVLYQLLNGGDVKRINMSSPADNSVVVQDLLPNHSYLFKVKAQSQEGWGPERE
GVITIESAVDPNSPLSPMPGSSFTLSTPSAPGPLVFTALSPEALQLSWEKPRKPNGDILG
YVVTCEHLHGGGDMRSFQVSGDSAETSLTVPDLSENMPYKFKVQARTTQGFGPEREGIIT
IESQDDGSMSQLGGLGGTSQLGGLGSMSQLGGLGSMSQLGGLGGTSQLGGLGSMSQLGGL
GSMSQQGGLGSMSQLGGLGSMSQLGGLGGTSQYSSQSLTKRDVYQLPTEGSTRTNVTHTM
INDPYYSGDGMMMVGKTTQHTETSGMVTRHVTKEVVQRSMQVAGTSSVTKKVERSFYET
NT seq
6120 nt
NT seq
+upstream
nt +downstream
nt
atggggagatggacgttacatttcttggtgggggttgtacttgctgtcctcacggccagt
agctacgctgaaaaagtaaaccactgtctggctgcaagggctaacacctgttcagcatgt
atccagtccggaaagggatgtgcctactgcccagacgagatctttgatggtccccgctgt
gaccttctggagaacatcatagaccacggctgtaatggcgcagtgacggccgaaggcagt
atgtcaatggagagaaaccagaagattgacatgttgatgaagcgctctcaggtggccccc
caggatatgtccatgactctgctgccgggggaggagagggagatcgagatggaggtgttt
gaaccagcgaaaggacctctggacctctacattctcatggacttctccaactccatgaag
gatgatttggacaacctcaaaaggatgggtgctgagctggctgacttggtggggaagctg
tctgatgattacaccatcggtttcggcaaatttgtggacaaggtggtggaaccccagaca
gacatgagaccgatcaaactggcccagccgtggcccaacagcgaccctcccttctcgttc
cgaaatgtgatcactctgacccctgacctgcagtccttcacccagaagctgcagaaggag
aggatctcaggcaacctggatgctccagaggggggcttcgacgccatactgcaggctaca
gtctgcggggaaaagatcggctggcgtgaccatgccactcaccttctggtcttctccacc
gagtcggccttccactacgagagtgacggtgccaacgtgctggctggcatcatgccacgc
aatgacgagcagtgccacctggaccccgatgggaaatacacagaggacaccaggcaggac
tacccttctgtgcccaccctggtccgcctgctgggcaaacacaacatcatccccatcttt
gccgtcacaaaccactccttcacctactatgagaagcttcatgagtatttccccatcgct
gagctgggcctgctacaggaagactccgctaacatcctcaatatcctggagaaagctttc
gagaatatccgttctaagatcagcatccgtgcggaggacagacctaaagctatagaagct
caggtcctgtcttacagtggcagtgttgcacaagctggaaccttcaaagtcaagcctggg
caaatagggaagtttaaggtgcgtgtcaaggccagtgagatggttggagagcaacatgtg
tgcagtctggagcagggtgacaaaaaggggaagatgagagtcaaaccgacaaccttcagc
acggctctaaacatcaacgccgaagtgctctgtaaaacctgcgactgtgagaagaatcca
tttcgaaacgcagtgaggtgtacaggccacggagacctggtctgtgggaagtgcaagtgc
aacgacggctggttgggtccgttctgtaactgctctgccagcgcgtcgacggatccgggc
acttcctgtcggggtcctggcgtggaggagccgtgttctggccgaggagattgcctgtgt
ggagcgtgtgtttgttacaacacggaccagtacgagggatccctctgtcagtttgacaag
tcccagtgtcaacgatacggaggcttcctctgcaacgaccgtggtcgctgcttcatgggc
cagtgtgcgtgtgcagagggctgggagggatcggcctgtgagtgtcccatgagcaaccag
acctgtctggacacgaacgggggcgtctgtaacgggcgaggtgtgtgtaagtgtggtcgc
tgtgagtgccaggactctggcctggccatgacccccacctgcgaggctaacttccaggcc
cagctggggatgtgtgaggacaagaggagctgtgtccagtgtcaggcctggaagaccgga
gagaagaaggacagcgaccagtgtgaccagtgccagttcaaagtggtcatggtggaagag
ctcaaggaaaataaagaggtgattgaggcgtgtagtttccgcgacgaggatgacgactgt
acgtaccactacaccgtggactaccctgaggaccagactgttaaggacctggaggtccag
gtgctcaagaagaaagactgtccccctgctggcttcctgtggctgatccctctcatcatg
ttcctcatgctactgctgggtctactgtcgctctgctgttggaagtactgcgcctgctgc
aagtcctgtcttgctttgctgccatgctgtggaagaggtcgtatggttggctttaaggaa
aatcagtacatgctccgccaatccatgctcacctctgaccacttagacacgcccctagtg
aggaccggcccacccaagagcaccgacgtggttcgctggaagatcaccgacaatgtccac
cgatcgcccaatcatccgcttgcgcaggttcagcccaaccccaaagagaccatccagttc
cctctgtctctgcgtctgaacaggttgttcacagacagtctgtctcactccgacgccaga
gacactgagttgctacgcagggaggttgatgacaacttgaatgaagtgtacaagcaggtt
cctggcacccagagagttcagaacaccacatttagattacagagaaatgctggtaaaaga
gctgaccacgccatcgtagacaccgttctgtccgctcctcgctccagctaccccaacatc
gtcaaactgactgagaaaaacgtccagtctggaaacttccaggatctcaaagtggtgccg
ggctactacacagtggccacagacagagaggcggctggtgccgtggagttccaggagggg
gtggagacggtggatgtgcacgtgccgctcttcgtcaaggaggaagatgatgataagaag
cagctgcaggtggaggcggtggacgttcctctgggtatcgctgagatagggaaacgcttc
gtcagcatcactatcatcaaagaacacgccaagagtgttatgtcgttcctccagccttcg
tacacctacagccgacaggacaaagtggctaacatccccattactagagagatcatagag
gatggacacgcacaggtcagctaccgcacccgagacctcaccgccaaggacaagaaggac
tatgtgacagtggatggggaattgtcctacgggccaggggagacccagcagactgtccct
gttcgtttgttggagatgggagagggagacggtctgctgaaggacacacaggtcaaacaa
tttgtcatggacctcagtaacccaagacagggagccaagctgggacgctaccccagaacc
actgtcaccatcactgacaaaccagagcccagtgtggtgatgtttatgaagagcacccag
aacttctccaccgccgacccaacctactccatccccgtggtccgcacccgcaataaggag
gggcccgccaccgtccactggaggacccgcaacgctaaacgcttcgagctgtccggcccc
ctaaagtttggtcccggggaaaccgagaagaacatcgtgatcgatccacgctctcaccct
ggcccggtgaaaccagagtccttccaactggaactgtttgaccccagtacgaaagctgtg
gtcggagagaggaagacaacgatggtcactattactgatggaggacttccagaaaatgcc
cagatggagaagagtgcgggcttcatcaaccagacagccacgtctcctggtggtcgtctc
aactctcccaccaacgtgaaggccaaagccaccggcccccggagcatccgccttaactgg
gaccccttaggaaaatccctgggctacaaggtgaagtattggatctatggggatcctgag
gctgatgccccccctgcgatgaatgtaaagacaaaccatgctgacctgaccaacctgtac
ccctattgtgactacgagacgaaggtgtgtggctacaacgccctgggagacggaaactac
agcgacatggtgccctgtaagaccctggaggatgtccccagtgagcccggtcgtctggcg
tttaacgtcatcagtccaactgtcactcaggtcagctgggcggagcctgccgagaccaat
ggtgtcatcaccgcctacgaggttctctacacgcccatcaatgacgacacgaagccgatg
ggtgcagctaagaaggtgaagatagacaaccctaagaagaggatgttgctgattgagaac
ctgcagtcggcccagacttactgctatcaggtccgggctaagaacagcgtgggttggggt
cctttcaaagaagcgaccatcaacctggcctcccagcccaccagacccatgtccatccct
atcatcccagacatacctatagtggacgcggaggcgggggatgagtacgacggctacctg
atgtacagcagtgaggtcatgagatcgccaacagactccaagagacccagcgtctcagac
gaagaaccaattaacggcaggttggaacagaacttcctcttccccgggggaaataattcc
atgtcgcgcagtaccaacatgtcttcatccagctacagccaggtgtctcccatgtccacc
cttagctccagccaccgagggggggccggggggtccatgtccatggagtccaccacaaca
tacctctctggacaaggaggaaactctctttcccgcactcaggtgattgggggcgggacg
cgcacggagaatgttgtcatgaggaagcgatcagagaacagaggttactatgagtatgac
gacaacatccgagattccatcatcataggagacctgtccagtggattgtctggatacaca
gatggccaaagtacttatggcttcagtcccactcagacacagagtcagtacgactacggt
atgtctcaggccttccgggccaggacccagtctgaggatgtcaacgatgcactactgaac
ctggacagggtgctccaggacgctcgtttggcccctggggtcccagacacccccaccagg
ctggtgttctctgccctgggccccactgccctgaagatcagctggcaggagccccactgt
gacagggatgttttagggtactgtgttctctaccagctgctgaatggaggtgatgtgaag
cgtataaacatgtccagccccgcagacaactccgtggtggtgcaggacctgctgcctaac
cactcctacctgttcaaggtgaaggctcagagtcaggaaggctggggaccggagagggag
ggagtcatcaccatagagtcagctgtcgaccccaacagcccactcagcccaatgccaggt
tcttccttcactctcagtacccccagtgctccaggccccctggtgttcacagctctgtcc
cccgaggcactgcagctgagctgggagaaaccccgcaaacccaacggagacatcctgggc
tacgtggtcacctgtgaacatctgcacggaggaggtgacatgcgttccttccaggtgagc
ggtgacagcgctgagaccagtctgacagttccggacctgagtgagaacatgccgtacaag
ttcaaagttcaggccaggacgacccagggcttcggccccgagagggagggcattatcacc
atcgagtctcaggatgacggtagcatgtctcaactaggaggcctaggtggtacatctcaa
ctaggaggcctaggcagtatgtctcaactaggaggcctaggcagtatgtctcaactagga
ggcctaggtggtacatctcaactaggaggcctaggcagtatgtctcaactaggaggccta
ggtagtatgtctcaacaaggaggcctaggcagtatgtctcaactaggaggcctaggcagt
atgtctcaactaggaggcctaggtggtacatctcagtacagcagtcagtccttgaccaag
agagatgtgtaccaacttcctacagagggcagcacacgcaccaacgtcacacacaccatg
atcaacgacccatactactcaggagatggtatgatgatggtggggaagacgacccagcac
acagagaccagcggcatggtgacacgtcatgtgacgaaggaggtggtgcagaggagcatg
caagtggccggcaccagcagcgtcaccaagaaggtcgagaggtcattctacgagacctga
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integrated database retrieval system
