Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139368210
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Entry
139368210 CDS
T10872
Name
(RefSeq) integrin beta-3-like isoform X1
KO
K06493
integrin beta 3
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03266
Virion - Herpesvirus
ocla04081
Hormone signaling
ocla04145
Phagosome
ocla04148
Efferocytosis
ocla04510
Focal adhesion
ocla04512
ECM-receptor interaction
ocla04810
Regulation of actin cytoskeleton
ocla04820
Cytoskeleton in muscle cells
ocla05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03266 Virion - Herpesvirus
139368210
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04081 Hormone signaling
139368210
04512 ECM-receptor interaction
139368210
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
139368210
04148 Efferocytosis
139368210
09144 Cellular community - eukaryotes
04510 Focal adhesion
139368210
09142 Cell motility
04820 Cytoskeleton in muscle cells
139368210
04810 Regulation of actin cytoskeleton
139368210
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
139368210
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ocla04131
]
139368210
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ocla04147
]
139368210
04515 Cell adhesion molecules [BR:
ocla04515
]
139368210
04090 CD molecules [BR:
ocla04090
]
139368210
Membrane trafficking [BR:
ocla04131
]
Endocytosis
Phagocytosis
Integrins (complement receptors)
139368210
Exosome [BR:
ocla04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
139368210
Cell adhesion molecules [BR:
ocla04515
]
Integrins
Integrin beta subunits
139368210
CD molecules [BR:
ocla04090
]
Proteins
139368210
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Integrin_beta
Integrin_b_cyt
Integrin_B_tail
PSI_integrin
I-EGF_1
EGF_2
EGF_integrin
EGF_TEN
EGF_Teneurin
BNR_6
Motif
Other DBs
NCBI-GeneID:
139368210
NCBI-ProteinID:
XP_070962958
LinkDB
All DBs
Position
16:complement(22769747..22814312)
Genome browser
AA seq
805 aa
AA seq
DB search
MGRPTHITQRIQLWIGSFVLFAVTDVLGSNICTSRGASTCKQCLAVHPTCAWCSQEDFGQ
GVAGSSRCDLKRNLLVAGCAPPTALEFPTSKLQVKEDRPLSNKAAGDTADATQIQPQRLH
ITLRPDDSKRFTVKVRQVEDYPVDLYYLMDLSFSMNDDLFRLRTLGKGLAKEMGRTTSNL
RMGFGAFVDKPLSPYMYISPKEALLNPCHGINTTCLPQFGYKHVLSLTEEVGRFTEEVKK
QIVSRNRDAPEGGFDAIIQAAVCNEKIGWRQGASHLLIFTTDAKTHVALDGRLAGIVQPN
DGKCHLNSENMYSMSTIMDYPSLALITEKMSENNINLIFAVTSPVVPLYQNYSELIPGTT
VGTLSNDSGNVIQLILNAYAKIRSVIDMETQGVPEELSLTFNATCLNGEVIPGIKSCSGL
KIGDTVSFSVEARARGCPKDKRKTFVIKPVGFKDSLTVTVTFECECKCQARAEPLSPVCN
NGNGTYECGICLCHPGRLGPRCECAEGDYSTTEQDRCSVPSTVGIGGAGGPGAAVCTGRG
DCVCGQCVCHSSDFGKVWGKLCECDDFNCLRYKGELCSGHGTCDCGFCQCDSDWQGENCN
CSRRTDTCMSSLGLLCSGRGQCVCGACECIQPGAYGATCDKCPTCPDACTMKKECVECKH
FKRGKLFDDNTCTRICRDEIQLVDDLEFHDKNAVNCTYKDEDDCVERFQYYEDASGKSIL
FVVKEPDCPKGPDILVVLLSVAGAILVLGLAGLLIWKLLVTIHDRREFAKFEEERARAKW
DTVHNPLYKGATSTFTNITYRGNKE
NT seq
2418 nt
NT seq
+upstream
nt +downstream
nt
atgggtaggcctactcacataacgcaaaggattcaactttggataggttctttcgtttta
tttgcagttactgatgttttgggttccaacatctgtacatcccgaggggccagcacatgt
aagcagtgtctggctgtacatcctacctgtgcgtggtgttcccaagaggactttgggcag
ggtgtggcaggctcgtctcgttgtgacctgaagcgtaacctattggtggcgggctgtgct
cctccgaccgcccttgagttccccaccagcaagctgcaggtgaaggaggaccggcccctc
agcaacaaggcagccggagacacggccgacgccacgcagatccaacctcagagactccac
atcaccctcagaccagatgactccaagcggttcacagtgaaggtgcgccaggtggaggac
tacccggtggacctgtattacctcatggacctgtccttctccatgaacgatgacctgttc
cgcctccgcaccctggggaaaggcctggccaaggaaatgggacgcaccaccagcaacctg
cgcatgggcttcggagccttcgtggacaagccactgtcaccttacatgtacatctccccc
aaggaggccctgctcaacccctgtcacgggatcaacaccacctgcctgccccagtttggc
tacaagcatgtgctgtctctgactgaggaggtgggccgcttcactgaggaggtgaagaaa
caaattgtgtccaggaacagagatgcccccgagggaggcttcgacgccattatacaggct
gccgtgtgtaatgagaagatcggttggcgtcagggtgcctctcacctcctgatcttcacc
accgatgccaagacccacgtggcgcttgatgggcgcctggcgggtatcgtgcagcccaat
gacgggaagtgccacctcaactcagagaacatgtacagcatgtctactatcatggactac
ccgtcactggctttgatcacagagaagatgtcagagaacaacatcaacctcatctttgcc
gtcaccagtcctgtggtgcccctctaccagaactacagtgagctgattcctgggaccact
gtgggcaccctgtccaatgactcaggcaatgtcatccagctcatattaaatgcctatgcg
aaaatccgctcagtgattgacatggagacacagggggttcctgaggagctgtctctcacc
ttcaacgccacctgtctcaatggagaggtcatccctggcataaaatcctgctctggactc
aaaataggagacacggtctccttcagcgtggaggcgcgggcgcgcggctgccccaaggac
aagcgcaagacgttcgtcatcaagcctgtgggcttcaaggactctctgaccgtcactgtc
accttcgagtgcgagtgcaagtgccaggcccgcgccgagccactcagccctgtctgtaac
aatggcaacggcacctatgagtgtggcatctgcctgtgtcacccggggcgactggggccg
cggtgcgagtgtgccgagggtgactacagcaccacggaacaggaccggtgtagtgtaccc
tccaccgtgggcattgggggtgcagggggtcctggggcagcggtgtgcactgggaggggc
gactgcgtgtgcgggcaatgcgtgtgccacagcagcgactttggcaaggtgtggggcaag
ttgtgcgagtgcgatgacttcaactgcctgcgctacaagggcgagctgtgctcaggccac
ggcacctgtgactgtgggttctgccagtgtgactcggactggcagggggagaactgtaac
tgctcccgccgtactgacacctgtatgtccagccttggcttgctgtgtagtggccggggc
cagtgtgtgtgcggggcctgcgagtgcatccagccgggggcctatggggccacctgcgac
aagtgccccacctgccccgatgcctgcaccatgaagaaagagtgtgtggaatgtaagcat
ttcaagcgagggaagctgtttgatgacaacacctgcacccgcatctgcagagacgagatt
cagctagtggacgaccttgagttccatgataaaaatgctgtgaactgcacctataaggat
gaggatgactgtgtggagcgcttccagtattatgaggacgccagtggcaagtccatccta
tttgtggtcaaagagcctgactgccctaagggtccagacatcctggtggtgctgctgtct
gtagccggggccatcttggttctgggtctggccggcctgctcatctggaagctgctggtc
accattcatgaccgccgcgagttcgccaagtttgaggaggagcgtgctcgcgccaagtgg
gatacggtccataaccccctgtacaaaggagccacctcaaccttcacaaacatcacatac
agaggcaacaaggagtga
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