Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139368271
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Entry
139368271 CDS
T10872
Name
(RefSeq) transcription initiation factor TFIID subunit 6-like
KO
K03131
transcription initiation factor TFIID subunit 6
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
139368271
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ocla03021
]
139368271
03036 Chromosome and associated proteins [BR:
ocla03036
]
139368271
Transcription machinery [BR:
ocla03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
139368271
Coactivators
SAGA/TFTC/STAGA complex
139368271
Chromosome and associated proteins [BR:
ocla03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
139368271
STAGA complex
139368271
TFTC complex
139368271
SAGA complex
139368271
SLIK complex
139368271
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF6_C
TAF
Histone
TFIID-31kDa
CENP-S
CBFD_NFYB_HMF
Bromo_TP
Motif
Other DBs
NCBI-GeneID:
139368271
NCBI-ProteinID:
XP_070963101
LinkDB
All DBs
Position
2:44124071..44136975
Genome browser
AA seq
639 aa
AA seq
DB search
MAEERRPKQCTVVLPTESMKAMAESIGVGQLQEESCAALSEEVSYRIKEIAQDALKFMHH
GKRRKLTTSDIDHALKLKNVEPLYGFQSQEFIPFRFASGGGRELHFYEEKEVDLSDIINT
PLPRVPLDVSLKAHWLSIEGVQPAIPENPPPAPKEQQKAESTEPLKVVKPGQEEEGSIQK
GQGAISAEAKGKKEGLMRMKPRSTHELSVEQQLYYKEITEACVGSCEAKRAEALQSIATD
PGLYQMLPRFSTFISEGVRVNVVQNNLALLIYLMRMVKALMDNPTLYLEKYLHELIPAVV
TCIVSKQLCLRPDVDNHWALRDFAARLMAQSCKTFSTTTNNIQSRITKTFTKSWLDEKTQ
WTTRYGCIAGLSELGPDVIKTLILPRLTVEGARIKAVSEGPVVSNIDKIGADHVQSLLLK
HCASVIAKTRPLPDNMEQYRADYGYLGPTLCSHVVKARAQAALQAQQVNRTTLTITQPRP
TLTVSQSGIGGSGGSRSPSIIKVPSSLTLMSTRPGTPTQPSPPATKYIVMATSAGASSTQ
QVITLSSSSGSSVTSTVASATSTLQPLVKLESRGAGGLGGSRPLQKYIVVSLPTSASSSL
ESKSGMLPPSSSSTSPISLEAGMKMDRSDSPGASTQSPH
NT seq
1920 nt
NT seq
+upstream
nt +downstream
nt
atggcggaggagcggaggccgaagcagtgcactgtggttctgcccactgagtccatgaag
gccatggcagagtccataggagtggggcagctacaggaggagagctgtgccgccctgagc
gaggaggtcagctacagaataaaggagatcgcccaggacgcgttgaagtttatgcaccac
ggaaagagacgtaaactgacgacaagcgacatagatcatgctcttaaactgaagaatgta
gagcctctgtatgggttccagtcgcaggagttcatcccgttccgctttgccagcggagga
gggagggagcttcacttctacgaggagaaggaggtggaccttagtgacatcatcaacaca
cccctccctagagtcccacttgacgtttcactcaaagctcactggttaagtattgaaggt
gtccagcctgctataccagaaaacccacccccagcccccaaagagcagcagaaggctgag
tctacagagcccctcaaggtggtcaagcctggtcaggaggaggagggctccatccagaag
ggccagggagctatatctgcagaggctaaaggtaagaaggagggtctgatgaggatgaag
ccccgcagtactcacgagctctcagtggaacagcagctctactacaaggagatcacggag
gcctgcgtcgggtcctgtgaggccaagagagctgaggctctacagagtattgctacagac
cctgggctctaccagatgctccccagattcagcacatttatctctgagggggtccgtgtg
aacgtggtgcagaacaacctggccctgctcatctacctgatgaggatggtcaaggccctc
atggacaaccccacactctacttagagaaatatctgcatgagttgatcccagcggtggtg
acgtgtatagtgagtaagcagctgtgtttgcggcctgacgtggacaaccactgggctctg
agggacttcgctgcccgtctgatggcccagagctgtaagaccttcagcaccaccaccaac
aacatccagtcacgcatcaccaagaccttcaccaagagctggttggatgagaagacccag
tggacgacacggtatggctgcatcgctggactgtctgaactaggacctgacgtgatcaag
acgttgatcctgcccaggctcactgtagaaggagctcgtatcaaagctgtgtctgaggga
cctgtggtctccaacatcgataagataggagcagaccacgtccaaagccttctactgaaa
cactgtgccagcgttatcgccaagactcgtcccctgcctgacaacatggagcagtaccgg
gcagactacggttacctggggcccacgctctgttcccacgtggttaaggcccgggcccag
gcagcactacaggcccagcaggtcaacagaaccacactcaccatcacacagcctcggccc
accctaacggtgtctcagagcgggataggagggtcgggggggtcccgttcgcccagcatc
atcaaggttcccagctccctcaccctcatgtccacccgaccaggcaccccaacacagcca
tcgccaccggcaaccaagtacatcgtcatggcaaccagtgcaggggcgtcctccacccag
caggtgatcaccctgagttcctcctcgggctcctcggtaaccagcacggttgccagcgct
acctccaccctgcagcctctggtcaagctggagtccagaggggccggcggcctggggggg
tcgcgacccctccagaagtacattgtggtgtctctccccacgtccgcctcttcctccctg
gagagtaagagtggcatgctccccccctcctcttcctccacctctcccatctcgctggag
gccgggatgaagatggatcgctcagactctcccggggccagcacacagtccccgcactaa
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