Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139368288
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Entry
139368288 CDS
T10872
Name
(RefSeq) integrin alpha-M isoform X1
KO
K06461
integrin alpha M
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04145
Phagosome
ocla04514
Cell adhesion molecule (CAM) interaction
ocla04517
IgSF CAM signaling
ocla04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecule (CAM) interaction
139368288
04517 IgSF CAM signaling
139368288
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
139368288
09142 Cell motility
04810 Regulation of actin cytoskeleton
139368288
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ocla04131
]
139368288
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ocla04147
]
139368288
04515 Cell adhesion molecules [BR:
ocla04515
]
139368288
04090 CD molecules [BR:
ocla04090
]
139368288
00536 Glycosaminoglycan binding proteins [BR:
ocla00536
]
139368288
Membrane trafficking [BR:
ocla04131
]
Endocytosis
Phagocytosis
Integrins (complement receptors)
139368288
Exosome [BR:
ocla04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
139368288
Cell adhesion molecules [BR:
ocla04515
]
Integrins
Integrin alpha subunits
139368288
CD molecules [BR:
ocla04090
]
Proteins
139368288
Glycosaminoglycan binding proteins [BR:
ocla00536
]
Heparan sulfate / Heparin
Adhesion molecules of cell surface
139368288
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
ITGAX-like_Ig_3
FG-GAP
VWA_2
Integrin_A_Ig_2
Integrin_A_Ig_1
FG-GAP_2
FG-GAP_3
vWA-TerF-like
Motif
Other DBs
NCBI-GeneID:
139368288
NCBI-ProteinID:
XP_070963133
LinkDB
All DBs
Position
16:complement(27281365..27338830)
Genome browser
AA seq
1142 aa
AA seq
DB search
MTMDWIIPLSFYLSVPQGALAFNIDPAAWKYVSEPAAGFGYKVVQNNPSSLLISAPLDQY
KQNRRGQVYRCLVRDSSCIPLSIQEPSHGINMSLGLSMTKDPESLNTMVCGPTIPRECKS
ITTYNGMCFEIDQSLNVKQPVPSSLEECPGQTDIAFLLDGSGSVNKFDFEKMKDFVKDLI
REFLERDTKFAVAQYSDYCTIHFDLNTFNVMNRDYQVNSIAQQGGRTYTAASIKKVVQEV
FSTSRGSRPKAKRIMIVITDGQSHDSGMLENAASEAEAKNIIRFAIGVGGAFSSSTARKE
LETIASSPPRNHMFQVGSFQALDQIKDTLQNSIFPIEGSQTTGESIKMEMAQEGFSAAYI
PKRGFQMGAVGAFQWKGAYQEYTGSTLYPTPQQSQNMEPDSYMGYSMAVATTHTRQFTIL
GAPRFKHTGRVVVLPSRDTDKPIEYSGQIGAYFGAEVCAMDVNKDSYSDLVLISAPMFTD
RDREGRVYVCTINDRSGVACQLNAEMTLVGDAGQMGRFGTSLAPLPDLNMDGFNDLAVGA
PLENDGQGSVYIFHGTSSGISKIKSQKISASDVQSGLKYFGLSISQTSLDMSLDSLPDLA
VGSKGAVLLLRSRPIVTLMARVSFNPPKIPTNQVDCSTPLRNIAKVCFTMTRQTTDTKDL
QAKINYTLTLDVTRQAPNYRAYISPKIREETNTITLRLQEQCFSHNFFIEACPEDSLNEL
SNELHFTFEGLPTTSPGGLSSSLSPRSPTSTYHPLGFEINCGADNNCIDNLKVDFNFTRS
SEVRVGIDEVINVTVSVESREENSYNSHVILKYPAGLSFRKFTILQGRVECNSSDSVGNV
MWGLSDCTIDKPIFKSDSKALLVISYGIDRNTQFGQMMTFIANASSGNTHSPKSELSKVK
EIGVKYSIFVVIKRNEDSTSYVNFTAGKNDLQKHVKQSFEVENYERGFNLTVIIKVPMKL
GDKDIWADPNGIQIQGCQRHKNEEPTATEFVDQLQKNHAVDCSVANCGVFMCKSFIRNLD
RNSYNITGNLSSQWIEQIGLESAQFNLVSSATVDYDRNQYIYYSSDSKNNPPIQKIETQV
EVYPEVNFTKGVIGGVVGGLLLLALITAGLYKAGFFKSQLKQMMQNTSEDGPGGDGEAAS
PE
NT seq
3429 nt
NT seq
+upstream
nt +downstream
nt
atgacaatggattggataatacccctttcattctacttatcagtgcctcaaggtgctttg
gcttttaacattgacccagctgcttggaagtatgtcagcgaacctgctgctgggtttgga
tacaaggtggtacagaataacccatcaagcttgcttataagtgcccccctggatcagtat
aagcaaaataggaggggacaagtttaccgatgtctggtcagagattcatcttgcatacca
ttgtcaatacaagagcccagtcatgggatcaatatgtctcttggtttgtcaatgacaaag
gatcccgagtcactaaacaccatggtatgcggaccaaccatcccaagagagtgcaaatcc
atcaccacctacaatgggatgtgctttgaaattgaccaaagtcttaatgtgaaacaacct
gtcccttcatctctggaagaatgtcctggacaaacagacatagcctttctattggatggg
tcaggaagtgttaacaaatttgattttgaaaaaatgaaagactttgtgaaagatctgatc
agggaatttctggaaagggatactaagtttgcagttgcccagtattcagactattgcact
atacattttgacttaaatacgtttaatgtcatgaatcgggattatcaagtgaatagtatt
gctcaacaaggtggacggacttacacggcagcatccatcaaaaaagttgtccaagaggtc
ttttcaacgagtagaggatccagaccaaaggcaaagaggatcatgatagtcattacagat
ggacaatcacatgacagcgggatgctggaaaatgcagcctctgaggctgaagccaaaaac
attattcgatttgccattggggtgggcggagccttttcttcgtcaacagcaagaaaggag
ttagaaacaattgcctcctctccaccacgcaaccacatgtttcaagtgggcagcttccaa
gcacttgaccaaatcaaggatacattacagaacagcatttttcctattgaaggatctcag
actactggggaatctattaagatggaaatggcccaggagggattcagtgcagcatacatt
cctaagagaggattccagatgggagctgttggagccttccaatggaagggggcttaccag
gaatacacagggagcactttataccctacaccacaacagagtcagaacatggaaccagat
agctatatggggtactccatggcagttgctacgacacacactcgccagtttaccatttta
ggtgctccaagatttaaacacactggacgagtggtggttcttccgtccagagacacagac
aagccgatagaatattctggacagattggcgcttattttggtgcagaggtctgtgcaatg
gatgtgaataaagactcatatagcgacctagtcctcatatcagctccgatgttcacagac
agagacagagagggcagggtatatgtctgtaccatcaatgacaggtctggggtggcctgt
caattaaatgctgagatgacactggtgggggatgcaggacaaatgggcaggtttggaact
tctcttgccccactgcctgacctgaatatggatggatttaatgatttagcagtcggagca
cctctagagaacgatggtcaaggaagtgtctacatattccatgggacgagtagtggaatc
agcaaaatcaaatctcagaaaatttcagcctcagatgtacagtctggattaaagtatttt
ggactgtccatcagtcagacttccctggacatgagtttggattctctcccagacttggcc
gtgggatcaaagggggctgttctcttactcaggtccaggcctatagtaacattgatggca
cgagtttccttcaacccacccaaaatccccaccaaccaggtggactgcagtacacctctg
agaaacattgctaaagtctgtttcaccatgaccagacaaacaacagacacaaaagatctt
caagcaaagattaactatactttaactctggatgtgacccgccaagctccaaactatcgt
gcttatatcagtccaaagatacgggaggaaacgaatactattacattaagacttcaagag
caatgcttctctcataacttctttattgaggcttgcccagaagactccctcaatgaactg
tccaatgaacttcacttcacatttgaagggttgccaacaacatctcctggtggcctcagc
tctagcctttccccgcggtctccgacttcaacatatcatcctttaggttttgagatcaac
tgtggcgctgataacaactgcattgacaacctgaaagtggattttaatttcactaggagt
tcagaggtgagggttggcatagatgaggtgataaatgtgacagtgtcagtcgaaagcagg
gaagagaactcttacaacagccacgttattctcaaataccctgcaggactttcattcagg
aagttcaccatactccagggaagagtggagtgtaactcatcagacagtgtgggaaatgta
atgtggggactaagtgactgcaccattgacaagccaatcttcaaaagcgattctaaggct
ctcttagtaatttcctatgggattgatagaaacactcaatttggccaaatgatgacattc
attgcaaatgcctcaagtggaaatacacactcgccaaagagtgaactttccaaagtgaaa
gagattggtgtgaaatacagcatttttgttgtgattaaaagaaatgaggattcaaccagt
tatgttaatttcactgccgggaaaaatgatttgcagaaacatgtgaaacaatcctttgag
gttgaaaattatgaaagaggcttcaatcttactgtgataatcaaggtgccaatgaagctt
ggtgacaaagacatctgggctgatccaaatggtatacagattcaaggttgtcaaagacac
aagaatgaggaacctactgccacagagtttgtggaccagctgcagaaaaatcatgctgtg
gactgctctgtcgcaaattgtggggtgttcatgtgcaaaagcttcattcgaaatttggat
cgtaactcttataacatcactggtaacctcagctctcaatggatagaacagattggtctt
gagtctgcccagttcaacttggtcagcagtgccactgtagattatgacagaaaccaatac
atctattattcttcggactccaaaaataacccacctatacaaaagattgaaactcaggtg
gaggtgtatcctgaggttaacttcacaaagggggtcattgggggtgttgtgggaggtctg
ctgctgttagctttgatcacagctgggctttataaggctgggtttttcaaaagccagttg
aagcagatgatgcagaatacatcagaagatggaccagggggtgatggagaagctgcctcg
cctgaataa
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integrated database retrieval system
