Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139368351
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Entry
139368351 CDS
T10872
Name
(RefSeq) ubiquitin conjugation factor E4 B-like isoform X1
KO
K10597
ubiquitin conjugation factor E4 B [EC:
2.3.2.27
]
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04120
Ubiquitin mediated proteolysis
ocla04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
139368351
04120 Ubiquitin mediated proteolysis
139368351
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ocla04121
]
139368351
Enzymes [BR:
ocla01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
139368351
Ubiquitin system [BR:
ocla04121
]
Ubiquitin ligases (E3)
U-box type E3
139368351
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ufd2P_core
U-box
Motif
Other DBs
NCBI-GeneID:
139368351
NCBI-ProteinID:
XP_070963221
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All DBs
Position
16:36114555..36211157
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AA seq
1175 aa
AA seq
DB search
MELSADEIRRRRLARLAGGQTSQPSTPLTSPQRETPPGPLPGTSGATPQPFPPAASHALG
LNVQGVIPPMGASGVAYRSQSSEGVSSLSSSPSNSLETQSLSRSQSMDIDTASCEKSSIS
QVDVDSGIENMEVEDNDRRERRNLAEKESAETSDVSEEQALQLICKILRVSWKEQDRDVI
FLPSLAAEFHQSSPKDVYSDFKDLIGQILMEVLMMSSMSHIHNPFASLTSTSQPIAAAKS
PDRHLTLVQPSSQGGSPMATCASSFGASSLSSLGVSAGGIDSQSCSDCFSIEACMETEML
NYLIERFDSVGMEESKAPKICSHPSVSQLLSNIRSQCISHAALVLQGALTQPRSPLQQSL
LVPYMLCRNLPYGFIQELARMTHQEEVFRQIFVPILQGLGLAVKECSFDSDNFKFPLMAL
AELCEIKFGKTHPMCNLMTSLPLWCPKSLGPGMGREFQRLSFLGAFFSLSVFAEDDTKVG
DKYFSGPAITMENTRVGSQTLQHYLESARGDLFKILHNILLNGETREVVLNYMAALVNRN
VKKAQMQTDDKLVSTDGFMINFLSVLQQLSMKIKLEMVDPYYIFHPLCRLQVSREETRLK
ATMEELKTWLAEIHDPSKLYDPKFPTECFFLTLHTHHLSILPGCRRYIRRLRAIRELNRT
VEELKNSESQWKDSPLASRHREMLKRCKTQLKKLVCSKACADAGLLDENLLRRCLQFYSM
VIQLILRMVDPAYPHITLPLNPEIPKSFAALPEFYIEDVAEFLLFVVQYSPQVLYEPCVQ
NIVTFLVVFICSQNYIRNPYLIAKLVEVLFVTNPAVQPRTQRFSEMMENHQLSVKHLVPA
LMKFYTDVEHTGATSEFYDKFTIRYHISTIFKSLWQNMGHHGTFLEEFNSGKQFVRYINM
LINDTTFLLDESLESLKRIHEVQEEMKNKEQWDQLPREQQQSRQSQLTQDERVSRSYLAL
ATETVDMFHILTKQVQKPFLRPELGPRLAAMLNFNLQQLCGPKCRDLKVENPEKYGFEPK
KLLDQLTDIYLQLDCARFAKAIADDQRSYSRELFEEVISKMKKAGIKSTITIEKFKLLSE
KVEEIVARNSQSEMDYSDAPDEFKDPLMDTLMTDPVILPSGNIMDRAIILRHLLNSPTDP
FNRQPLNESMLESLPELKERIQAWMREKQGQGRFL
NT seq
3528 nt
NT seq
+upstream
nt +downstream
nt
atggagttgagtgccgacgagatccgcaggaggagactggcaagactggcaggaggacaa
acatcccagcccagcactcccctgacgtccccacagagagagaccccccctgggcccctt
cctgggacctcaggggccacaccccagccctttccaccagctgcctcacacgcactggga
ctcaatgtccagggtgtcatccctcctatgggcgcctcaggtgtggcgtaccgcagtcag
agcagcgagggtgtgagctccctctccagctctccctccaacagcctggagacccagagt
ctgtccagatctcagagcatggacatcgacactgcctcctgtgaaaagagcagcatatcc
caagtggatgtggactcagggatagagaacatggaggtggaggacaatgaccgcagggag
aggaggaacctggctgaaaaggaatccgctgaaacctcagatgtctctgaagagcaggct
ctgcagctcatctgtaagatcctgcgtgtctcctggaaggagcaggacagagatgtcatc
tttctcccctcgcttgccgcagagttccaccagagcagccccaaagacgtctactctgac
ttcaaagacctgattggccagatcctgatggaggttctcatgatgtccagcatgtcgcac
atccacaatcccttcgccagcctgacttccacgtcccagcctattgctgctgccaaatct
cccgaccgccacctgacgctggttcagccctctagccagggcggcagtcccatggccacc
tgtgcaagctcatttggggccagctctctgtccagtctgggtgtgtctgcagggggaatt
gactcgcaatcctgcagcgactgcttctccatcgaggcgtgcatggagactgagatgctc
aactacctcatcgagcgcttcgacagtgtcggcatggaggaaagtaaggcgcccaagatt
tgcagccaccccagtgtcagtcagctcctcagcaacatacgctcacagtgcatttcccac
gccgctcttgtccttcagggtgccctcacgcagcccaggagccccctgcagcagtccctg
ctggtgccctacatgctgtgccgaaacctgccgtatggctttatccaggagctggcccgc
atgacccaccaggaggaggtcttcagacagatcttcgttccaatccttcaagggctgggt
ctggctgtgaaagaatgttccttcgacagtgacaactttaaattccccctcatggcttta
gctgagctctgtgagataaagtttgggaagactcaccccatgtgcaatttgatgacatct
ctgcccctgtggtgtcccaagtccctgggcccggggatgggccgagagtttcagagactg
tccttcctgggagcattcttcagcctgtcggtctttgcagaggatgacaccaaagtgggt
gacaagtacttctcgggcccagcgatcactatggagaacactcgtgtgggtagccaaacc
ctgcagcactacctggagtcagcccggggtgacttgtttaaaattctccacaacatccta
ctaaatggagagacaagagaggtagtgctcaactacatggcagctctggtcaaccgcaat
gtgaagaaagcccagatgcagacagacgacaagctggtgtccacagatggcttcatgatt
aacttcctgtcggtgctgcaacagctgagcatgaagatcaagctggagatggtagacccg
tactacattttccaccccctctgccgcctgcaggtcagccgtgaggagacccggctcaag
gccaccatggaagagctcaagacctggctggccgagatacatgacccctccaagttgtat
gatcccaagttccccacagagtgtttctttctgacgttgcacacccaccacctgtccatc
ctaccaggctgccgacgctacatccgcaggctgagagccattcgcgagctcaacaggacg
gtggaagagctgaagaatagtgagagccagtggaaggactctccgctggccagccgacac
cgagagatgctgaagagatgcaaaacccagctcaagaaactggtgtgctccaaagcctgt
gccgatgcgggtcttctggacgagaacctgttacgcagatgtctgcagttttacagtatg
gtcattcagctcatcctacgcatggtggatcctgcctacccacacataactctaccactg
aatcccgagatccccaaaagctttgctgctctgccagagttttacattgaagatgtggcc
gagttcctgctttttgttgtgcagtattcccctcaggtcctgtatgagccctgcgtccag
aacattgtcaccttcctggtggtgttcatctgcagtcagaactacatccggaacccctac
ctgatcgccaagctggtggaggttctgtttgtcaccaacccagctgtgcagccgcgcacc
cagcgcttctctgagatgatggagaaccaccaactgtccgtcaaacatttggtcccagcc
ctcatgaagttctacactgacgtggagcacaccggtgccaccagcgagttctatgacaag
ttcaccatccgctaccacatcagcaccatcttcaagagcctctggcagaacatgggccac
catggcactttcctggaagagttcaactccgggaaacagtttgtgcgttacatcaacatg
ctgatcaacgacaccaccttcctgctggacgagagcctggagtccctgaagcgcatccat
gaggtccaggaggagatgaagaacaaggagcagtgggatcagcttcccagggagcagcag
cagagccgccagtcccagctgacccaggatgagcgggtgtcacgctcctacctggccctg
gctacagagacggtcgacatgttccacatcctcaccaagcaggtccagaagcccttcctc
cggcccgagttggggcctcgtctggcggccatgctgaactttaacctccagcagctatgc
gggcccaagtgccgggacctgaaggtggagaacccagagaagtacggttttgagcccaag
aagctcctagaccagcttactgatatttacctgcaacttgactgtgcccgctttgccaag
gccatcgccgacgaccagcggtcatacagccgagagctctttgaggaagtgatttccaag
atgaagaaagccggcatcaagtccaccatcaccattgaaaaattcaagctgctatcggag
aaggtggaggagatagtcgccaggaactcgcagtccgaaatggactacagtgacgcacct
gacgagtttaaagaccctctgatggacacattaatgactgaccctgtgatactgccctct
gggaacatcatggaccgagccatcatcctccgccaccttctcaactcccccactgacccc
tttaacagacagcctctcaacgaaagcatgctggagtcactccctgaactgaaggagagg
atccaggcatggatgagagagaagcaaggccagggacgtttcctctag
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