KEGG   Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139368440
Entry
139368440         CDS       T10872                                 
Name
(RefSeq) heterogeneous nuclear ribonucleoprotein A1-like isoform X1
  KO
K12741  heterogeneous nuclear ribonucleoprotein A1/A3
Organism
ocla  Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ocla00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    139368440
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ocla03019]
    139368440
   03041 Spliceosome [BR:ocla03041]
    139368440
Messenger RNA biogenesis [BR:ocla03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Other transport factors
     139368440
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     139368440
Spliceosome [BR:ocla03041]
 Common components
  Common spliceosomal components
   hnRNP proteins
    139368440
SSDB
Motif
Pfam: RRM_1 RRM_7 RRM_PARP14_3 Nup35_RRM_2 RRM_3
Other DBs
NCBI-GeneID: 139368440
NCBI-ProteinID: XP_070963434
LinkDB
Position
16:40164778..40168458
AA seq 398 aa
MSKEAPREPEQLRKLFIGGLSFETTDESLREHFEQWGSLTDCVVMRDPANKRSRGFGFVT
YSGVNEVDAAMEARPHKVDGRLVEPKRAVSREDSSRPGAHVTVKKIFVGGIKEDTEDSHL
RDYFEQFGKIEVIDIMTDRTSGKKRGFAFVTFDDHDAVDRIVIQKYHTLNGHNCEVRKAL
SRQEMQTTGVGMRGGRGGGGNYGRGGGYGGNDFGRDGGYFDGSGGRGGGYGGGDGGYNNG
YGGGDGGYGGGPGGYGGGNRGYGGGGQGYGGGQGGGYGGGNGYNDYNNGNGGNFGGGKSM
ASPQEAAPVGGNFGGGGGGGGGNNYNDFGNYNNQASNYGPMKGNNFGGSGGGSGGGSSGG
SGGGGRSSGPYGGGYGGNSGGGGGGGGGYGGGSGGRRF
NT seq 1197 nt   +upstreamnt  +downstreamnt
atgtcgaaggaggccccacgtgaacccgagcagctccgcaaactgttcatcggaggtctg
agcttcgaaaccacggatgagagtttgcgagaacacttcgaacaatggggatctcttaca
gattgtgtggtcatgagagatccagccaacaaacgctctagaggttttgggtttgtcacc
tactctggtgtgaacgaggtcgatgctgccatggaagcacgcccccataaggttgatggt
aggctggtagagcccaagagggctgtttccagagaggactctagccgtccaggtgctcat
gtcacagtgaaaaagatatttgttggaggtatcaaggaagacactgaagactcccatcta
cgagactactttgagcaatttggcaagattgaagttatagacattatgaccgaccgcacc
agtggcaagaagaggggcttcgcctttgtcacgtttgatgaccatgatgcagtggacagg
attgtcatccagaaataccacactttgaacggtcacaattgcgaagtgaggaaagcattg
tccagacaggagatgcagacaacaggagtgggtatgaggggtggccgcggaggtggcggc
aactatggcagaggtggaggatatggaggtaatgattttggccgtgatggtggatacttc
gatggcagtggcggcagagggggtggatacggaggaggagatggcggttacaacaatggt
tatgggggaggtgacggtggttatggtggaggccctggtggttatggcggcggtaaccgc
ggctacggcggaggggggcaaggttatggtggcggacagggtggcggctacggtggtgga
aatggctataacgactacaacaatggcaatggtggaaactttggcggcggtaagtccatg
gcttccccacaagaagcagccccagttggtgggaactttggtggcggtggtggtggtggc
ggcggcaacaactacaatgactttggcaactacaacaaccaggcttccaactacggccca
atgaagggtaacaactttggaggcagcggtggaggtagcggtggtggcagcagtggtgga
agcggcggcggtggcaggagtagtggcccatatggaggtggatatggaggtaactctgga
ggtggtggtggcggcggcggtggatatggcgggggctccggtggacgacgattctaa

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