Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139368498
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Entry
139368498 CDS
T10872
Name
(RefSeq) ATP-dependent RNA helicase DDX19A-like isoform X1
KO
K18655
ATP-dependent RNA helicase DDX19/DBP5 [EC:
5.6.2.7
]
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03013
Nucleocytoplasmic transport
ocla03015
mRNA surveillance pathway
Brite
Enzymes [BR:
ocla01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
139368498
Messenger RNA biogenesis [BR:
ocla03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
139368498
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
139368498
NCBI-ProteinID:
XP_070963566
LinkDB
All DBs
Position
16:complement(42218579..42223580)
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AA seq
493 aa
AA seq
DB search
MATDSWALAVDKQEATTDSFGSLVIRSLPRGGGDAAPNKAKKGTTKQVENGTNVEGEEKE
DKAAQSLLNKMIHTSLVNTTNQVEVLQRDPNSPLYSVKTFEELRLKDKLLKGVYDMGFNR
PSKIQENALPMMLAEPVYYPSGSRPQNLIAQSQSGTGKTAAFVLAMLSHVDPTNKWAQCL
CIAPTYELALQTGKVIEQMGKFYPEVKLAYAIRGNKLDRGAKLQEQIVIGTPGTVLDWCS
KLKIINPKKISVFVLDEADVMIATQGHQDQSIRIQRMLPKECQMLLFSATFEDSVWKFAE
RVVPDPNIIKLKREEETLDTIKQYYVLCSDKEEKFTALCNIYGAITIAQAMIFCHTRRTA
GWLAAELTKEGHVVALLSGEMTVEQRATIIERFREGKEKVLVTTNVCSRGIDVEQVSVVI
NFDLPMDKDGNADNETYLHRIGRTGRFGKRGLAVNMIDSKHSMNILNQIEEHFNKKINKL
DTDDLDEIEKISN
NT seq
1482 nt
NT seq
+upstream
nt +downstream
nt
atggctactgactcctgggcccttgctgtcgataaacaggaagctacgactgactcattc
ggctccttggtgataagatctctacctcgaggtggaggtgatgctgcacctaataaggca
aaaaagggtaccacaaagcaagtggagaatggcaccaacgtagaaggagaggaaaaagag
gacaaagcggcccagtcattgctgaataagatgatccacaccagccttgtgaacactacc
aatcaagtagaggttcttcagagggatcccaactctcctctttactcggtcaagacattt
gaagagctgaggctgaaagataagctgctgaagggagtgtatgacatgggcttcaacaga
ccctctaagatccaggagaatgccctgcccatgatgctggcagagcccgtgtattatccc
tctggttccagacctcagaacctgattgcccaatcacagtccggtacaggtaaaacagct
gccttcgtgctggccatgctcagccatgtcgacccaactaacaaatgggcacagtgtctt
tgcattgccccaacgtacgagctagctttgcagactggtaaagtcattgagcagatgggg
aaattctatcctgaggtcaaattggcatatgccattcgtggcaataaattggaccgaggg
gcaaagcttcaggagcagattgtcatcgggacacctggcacggtcttggactggtgctcc
aaactgaagatcatcaaccccaagaagatcagcgtctttgtcctggacgaggctgatgtc
atgatcgccacacagggtcaccaggaccagagcatccggatccaaagaatgttgccaaag
gaatgtcagatgctgctgttctctgccacctttgaggactctgtgtggaagtttgcagag
agggttgtgccagaccccaacatcatcaagctgaaacgtgaagaggagactctggacacc
atcaagcagtattacgtgctttgcagcgacaaggaggaaaagtttacagcactctgtaat
atctacggcgccatcaccatcgcccaagctatgatcttctgtcacacccgaaggacagct
ggctggctggctgcagagctgaccaaggagggccatgtggtggcgctgctgagtggggag
atgactgtggaacagagagcgaccatcatcgaacgcttcagggagggcaaggagaaagtc
ctggtgaccaccaacgtatgctccagaggcattgatgttgagcaagtttctgtggtgatc
aattttgacctgcccatggacaaagacggaaacgctgacaacgagacataccttcaccgg
attggtcgcacaggacgtttcggcaagaggggccttgcagtcaatatgattgacagcaaa
cacagcatgaacattctcaaccaaatcgaggaacatttcaataagaagatcaacaagctt
gacactgatgatctcgatgaaatcgagaaaatcagcaactag
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