Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139368593
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Entry
139368593 CDS
T10872
Name
(RefSeq) neurofascin-like isoform X1
KO
K06757
neurofascin
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04514
Cell adhesion molecules
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
139368593
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ocla04515
]
139368593
Cell adhesion molecules [BR:
ocla04515
]
Immunoglobulin superfamily
L1 family
139368593
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
I-set
Ig_3
ig
Ig_2
fn3
V-set
Ig_DSCAM-DSCAML_C
C2-set_2
Ig_5
Pur_ac_phosph_N
Ig_6
V-set_CD47
Izumo-Ig
Bravo_FIGEY
Motif
Other DBs
NCBI-GeneID:
139368593
NCBI-ProteinID:
XP_070963746
LinkDB
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Position
16:complement(46412774..46440335)
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AA seq
1121 aa
AA seq
DB search
MRALVRSTLLLLLWQRLTAIDVPLEIRQPPTIIKQSLKEHVVDPRNNMVVECEAKGTPHP
IFSWRRNGKYFNVAKDPQASMRRRSGTLDIYAWTDPGAYEGEYQCVATNEYGAAYSNKIN
LHISKATLWPREVLEPVTVSVGLPLVLDCSPPPGPPKPEIYWMSKCSSGRPFNWPHQPHP
PVMLPIKQDRRVSMGVNGDLYFSHVYVNDSATDYCCNARFPYKNMIQQKMPITVRVLTTR
MVSEAAPTFLSPAGRSSSQTVLQGEELLLECIAAGVPTPVITWTKDGDELDTTNIKVKNY
NKLLQIPKASFEDAGEYTCTATNKIGYLEHTIAVQIKAAPFWLEKPSNLVLAPEENARLV
CRSDGIPRPSIRWFINGDSIEDATMVPNRQVSGDTVTFHSVTVANTGVYQCNASNQYGYL
FANAYISVLDATPRILRPRTALVKVIEGSCAWLDCRYFGSPVPDLRWSKYGLGNLEGNRF
KVHSNGTLQIRGTCMDDQGTYLCIVSNAAGKDENRVKLEVKESTKILKWPDNMRVLRGTD
VRLECKAEHDPTVTVTTTWMKNKQFLIIGWRLSLEDSTLVITNVNRRDEGNYTCIIKTEI
DKTTISARLVVMDRPDPPTNLKLSDSFERSVRLSWTPGDSNHSPIKEYLVQYDDDDWLPY
NWRNLSTYPGNLNSVILQLSPFIIYEFRVIAINDIGMSKPSRSSANFQTGGAPPDTIPKN
IKGVSTWRNNMEISWEALNNREWNGPHLKYLVWWKRRDSREEWKNATTWWCKYYIYDADT
FTPYEIKVQAVNDFGLGPESPVIIGYSGEDRPTAAPVKLRVSRIEATKVTVHWDPVARSS
IMGELKEYKVYFWRDSSQLRWLSVSRAMKSKAFPASGPRLSGVLPGLIPYSNYKMYIVVA
NNRYEGHPSNTIEFSTPEGTPSVPRFFRIQQRHLDTIWVDWDTPAEPNGIITGYILKYQT
VNTTREEELHVEEFPANTTSFAVRRYDRYTRYRFTIAAQTRIGVGEWYTEESPHYTTEAN
AREQVDLSTQGWVIGVMCAAALFVLILLVVCFIKRSRGGKYPVRDKKEVTLEPVDDNDQE
GSFDYRSLERISCVTTIPYSAQREEETKVKRGQTTVDTMMK
NT seq
3366 nt
NT seq
+upstream
nt +downstream
nt
atgagggcgctggtcagatcaactctattactgctgttatggcaacggctgactgccatc
gatgtcccactggaaatcagacagccccccaccattataaaacagtcgctgaaggaacat
gtcgtggatcctagaaacaacatggtcgtggagtgtgaagccaaaggcaccccccaccca
attttctcatggaggcgtaatgggaagtacttcaacgtggcaaaggaccctcaggcctca
atgaggagacgttcggggacgctggacatctatgcctggactgacccaggggcctatgag
ggggagtaccagtgtgttgccaccaacgagtatggcgctgcatactcaaacaagatcaac
ctacacatctctaaggccactctgtggcccagagaggtgttggagccagtaacagtaagt
gttggtctccctctggtcctggactgcagccctcctccagggcctcccaaacctgagatc
tactggatgagcaagtgttcatctggtagacctttcaactggcctcaccagccccacccc
ccagtcatgctgcctatcaaacaggaccgtagagtgtctatgggggtgaatggagatctc
tacttctctcatgtctatgtcaatgactctgccaccgactactgctgcaatgcacgcttc
ccctacaaaaacatgatccagcagaagatgcctattaccgtcagagtccttacaacgcgc
atggtgtctgaggccgcccccaccttcttgtctccggcaggaaggtccagctcccagact
gtcctgcagggggaggagctgctcctcgagtgcatcgctgctggagttccaacccctgtc
atcacatggaccaaagatggagatgaactggacacaaccaacattaaggtgaagaactac
aacaagttgttgcagatccccaaggcctcatttgaggacgctggtgaatacacctgcaca
gctactaacaagattggatacctggaacacaccatcgctgtccagatcaaagcggctcca
ttctggttggagaaacccagtaacctggttctggccccagaggagaatgcacgtttagtg
tgccgctctgacggcatccctcggcccagtatccgctggtttatcaacggagattcaatc
gaagatgccactatggttccaaacaggcaggtgtcaggtgatacagttaccttccattca
gtcactgtggcgaacacgggtgtttaccaatgcaatgcttccaaccagtatggctacctg
tttgccaatgcctacatcagtgtactcgatgcaacaccacgtatcctcaggcccaggact
gccctggtgaaagtcattgagggcagctgcgcctggctagactgccgctattttggctcg
cccgtgcccgatctgcgctggtctaagtatggacttggaaatctagagggaaatcgcttt
aaagtacacagcaacgggaccctgcagatcagaggcacctgtatggacgaccaggggaca
tacctgtgtattgtcagcaacgccgccggaaaagacgaaaaccgggtcaaattagaggtc
aaagagtccaccaaaatcctcaaatggccagacaatatgagagtcctccgagggactgat
gtccggttggagtgtaaggccgaacatgaccccacagtcaccgtcaccacaacctggatg
aagaacaaacagttcctcatcataggctggaggctgtcactggaggattcaacgctggtc
attacaaacgtcaacagacgagacgaaggcaactacacctgcatcatcaagactgagata
gacaagaccactatctctgcccgcctggtggtgatggatcgtccagaccctcctacaaac
ttgaagttgtcggactcctttgagcgcagtgtcaggctttcctggacccctggagatagc
aatcacagccctatcaaagaatacctggtgcagtatgatgatgacgactggttaccttac
aactggagaaacctttccacataccctggaaacctcaactctgtcattctgcaactgtca
ccattcattatctatgagtttagggtcattgctatcaatgatattggaatgagtaaaccc
agtcgctcgtccgccaacttccagactggtggagcgcccccagacaccatccctaaaaat
atcaaaggagtgagcacatggagaaacaacatggagatcagctgggaggcactgaacaac
agagagtggaatgggccccacctaaagtacttggtgtggtggaaacggagggattccagg
gaggagtggaagaacgctaccacttggtggtgtaaatactacatttacgacgcagacacc
ttcacaccatacgagataaaggtccaagctgtcaatgactttgggctgggcccagaatcc
cctgtcatcataggctactctggagaagaccgtcccactgctgcccccgtcaaactgcgt
gtgtccaggatagaggccaccaaggtcaccgttcactgggaccctgtggctcgcagcagc
atcatgggtgaactgaaggagtacaaggtgtacttctggcgagacagtagccagctgcgg
tggctgagtgtgagcagggccatgaagtcaaaagcctttccagccagcgggccgcgtctc
tctggtgtcctgccgggactcatcccttacagcaactacaagatgtacatagtggtggcc
aacaaccgatacgagggacaccccagtaacaccatagagttctccactccagagggaaca
ccctctgttccaagattcttcagaatccagcagagacatttggacactatctgggtggac
tgggacactcctgcagagcccaatggcatcatcaccggatacatactgaaatatcagaca
gtgaacacaacccgggaggaggaactgcatgttgaggaatttcccgcaaacaccaccagt
tttgctgtgcgccgatatgatcgctacacccgctatagattcaccatagcagcacagact
agaattggggtaggagagtggtacacagaggaatcaccccattatacaactgaagctaat
gcaagggagcaggtggacctctccactcagggctgggtcattggtgtgatgtgtgctgcg
gccctcttcgtgctcatcctgctggtcgtctgctttatcaagaggagccgaggggggaaa
tacccagtacgggacaagaaagaagtgacattggagccagtggatgataacgatcaggag
ggatcatttgactatcggtctctggaaaggataagctgtgtcaccaccattccctactct
gcccaacgggaggaggagactaaagtcaagaggggtcagacgacagtcgacaccatgatg
aaatga
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