Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139368751
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Entry
139368751 CDS
T10872
Name
(RefSeq) collagen alpha-1(II) chain-like
KO
K19719
collagen type II alpha
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04510
Focal adhesion
ocla04512
ECM-receptor interaction
Brite
Glycosaminoglycan binding proteins [BR:
ocla00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
139368751
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Motif
Other DBs
NCBI-GeneID:
139368751
NCBI-ProteinID:
XP_070964169
LinkDB
All DBs
Position
16:complement(54505894..54533049)
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AA seq
1420 aa
AA seq
DB search
MFSFVDSRTVLLLVASQVVLLSIVRCQEEDDHVAIGAKGQKGEPGEIADVVGANGPAGPM
GPSGEQGPRGSAGAKGDKGNVGPRGRDGEPGTPGNPGPPGPPGPNGPAGLGGNFAAQMAG
GFDEKAGGAQMGVMQGPMGPMGPRGPPGPSGAPGPQGFQGNPGETGEPGPAGPLGPHGPP
GPSGKPGSDGEAGKPGKAGERGPAGPQGARGFPGTPGLPGIKGHRGHPGLDGAKGEGGAA
GAKGEGGAPGENGASGPMGPRGLPGERGRPGPSGSAGARGNDGLPGPAGPPGPVGPAGAP
GFPGSPGAKGEAGPTGARGTEGAQGPRGEAGTPGSPGPAGASGNPGTDGIPGAKGSAGAS
GIAGAPGFPGPRGPPGPQGATGPLGPKGQSGDPGIPGFKGEAGPKGELGPIGPHGAPGPA
GEEGKRGARGEPGAAGPLGPPGERGAPGNRGFPGQDGLAGSKGAPGDRGVPGVGGPKGGT
GDPGRTGEPGLPGARGLTGRPGDAGPQGKVGPGGAAGEDGRPGPPGPQGARGQPGVMGFP
GPKGANGEPGKAGEKGLVGRQGLIGLAGKDGETGAAGPLGPPGPAGERGEQGAAGPSGFQ
GLPGPAGPPGEGGKPGDAGVPGEAGAAGATGPRGERGFPGERGGAGPQGLQGPRGLPGTP
GSDGPKGAIGPAGGAGAQGPPGLQGMPGERGAGGISGAKGDRGDNGEKGPEGASGKDGSR
GLSGPIGPPGPAGPNGIKGEGGPSGPTGAAGARGAPGDRGEGGPPGPAGFAGPPGADGQP
GAKGELGEAGQKGDGGAHGPQGPSGAPGPVGPTGVSGPKGARGAQGASGATGFPGAAGRV
GSPGPNGNPGAAGPAGPAGKDGPKGVRGDSGTPGRQGDAGLRGAAGAPGEKGDAGGDGLP
GPDGPSGPQGLAGTRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGAGGDRGPPGPVGPP
GLSGPSGEPGREGNAGSDGPPGRDGSTGVKGERGNTGPAGAPGAPGAPGAPGPVGPLGKQ
GDRGEGGAQGPAGPAGPAGARGMAGPQGPRGDKGEAGETGERGQKGHRGFTGLQGLPGPP
GSAGDQGAAGPAGPSGAKGPPGPVGPAGKDGSNGQPGPLGPPGPRGRSGETGPAGPPGNP
GPPGPPGPPGPGIDMSAFAGLSQPEKSPDPLRYMRADEASSSLRQHDVEVDSTLKSLNNQ
IENLRSPDGSQKNPARTCRDLKLCHPEWKSGDYWVDPNIGSTADAIKVFCNMETGETCVY
PSIANVPQKNWWTSKSNDRKHVWFGETMNGGFHFSYAEDGTNAASIQLTFLRLLSTEASQ
SLTYHCKNSVAYMDTSTGNLKKALLLQGSNDVEIRAEGNSRFTYSVVEDGCKKHTGQWGK
TVFEYKTQKTSRLPIVDIAPMDIGGADQEFGVDVGTVCFL
NT seq
4263 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggattcacggactgttctgctacttgtagcatcccaagttgtttta
ctatccattgtcagatgtcaggaagaggatgaccacgtggcgattggtgctaagggccag
aagggggaacccggcgagattgcagatgttgtaggagcaaatggaccagcaggccctatg
ggcccctcaggcgagcagggacctcgtggatcagccggagctaagggtgataagggaaat
gttggccccagaggcagagatggcgagcctggcaccccagggaaccccggaccccctggc
ccacccggacctaacggacctgcaggccttggcgggaactttgctgctcagatggctggt
ggattcgatgagaaagctggaggtgcacagatgggagtgatgcaaggacctatgggccct
atgggtccccgtggtccccctggcccttctggagcccctggcccacaaggtttccaaggt
aaccccggagagactggagagccaggcccagctggcccactgggaccacacggaccaccc
ggaccttctggcaaaccaggaagtgatggtgaggctggcaaacctggaaaggctggtgag
cgtggacctgcaggacctcagggagctcgtggattccccggaactcctggtcttcctgga
atcaaaggacacaggggtcaccctggtctggatggagctaagggagaaggcggtgctgct
ggagccaagggtgagggtggtgctcccggagagaacggcgcgtctggaccaatgggacca
cgtggtctgcctggcgagagaggccgtcccggaccttctggctctgctggtgcccgaggt
aatgatggcttgcctggccctgctggtcctcccgggcctgttgggcctgctggagcaccc
ggtttccctggatccccaggagccaagggagaagctggccccactggtgcacgtggaact
gagggcgcacagggaccccgtggagaggctggtacacccggatctcctggacccgctggt
gcctctggcaaccctggtactgatggtatccctggagctaaaggatctgctggcgcttct
ggaattgctggtgcacctggtttccccggaccccgtggcccccccggacctcagggagca
acaggacctcttggacccaagggacagtctggagaccccggtattcctggcttcaaagga
gaggctggtcccaagggagagcttggccctataggtccccatggcgcccctggccccgct
ggcgaggagggcaagagaggagcaagaggagagcccggtgctgctggaccacttggacct
cctggcgagagaggagctcccggtaaccgtggtttcccaggtcaggatggtcttgctggt
tctaagggagcccctggtgaccgtggtgttcccggcgttggtgggcctaagggaggcact
ggtgaccccggccgcacaggagagcctggtcttcctggagccagaggtctcactggtcgc
cctggagatgctggtcctcaaggcaaagttggtcctggtggtgctgctggtgaggatggt
cgccccggcccacctggtcctcagggagcccgtggccagcctggtgtgatgggattcccc
ggaccaaagggagccaatggtgagcctggcaaggcaggagagaagggtcttgtgggtcgt
caaggtctgatcggtctggctggtaaagatggtgagactggtgctgctggacctcttggc
cctcctggacctgctggagagagaggagagcaaggagctgctggaccttcaggcttccag
ggtctgcccggacctgctggccccccaggagagggaggcaagcctggtgatgcgggtgtt
cctggagaggctggtgctgctggtgctactggacctagaggcgagcgtggtttccctggt
gagagaggcggtgctggacctcagggtctgcagggacctcgtggacttcctggaactccc
ggaagtgatggaccgaagggagccattgggccagctggtggtgctggagctcagggaccc
ccaggtctgcagggtatgccaggagagaggggagctggtggaatctccggcgccaagggt
gacagaggtgacaatggagagaaaggacctgagggcgcttctggaaaagacggttctaga
ggtttgagtggtcccattggtcctcctggcccagctggtcccaatggcataaagggtgag
ggtggaccttctggcccaactggtgctgctggtgcccgtggtgctcctggtgaccgtggt
gagggtggtcctcccgggcctgctggcttcgctgggccacctggtgctgatggtcagcct
ggagccaagggagagttaggcgaggctggacagaagggagatggtggtgcccatggacct
caaggaccctctggggcccctggacctgtgggtcccactggtgtttctggacctaaagga
gctcgtggtgcccagggggcttctggtgctactggtttccctggtgctgctggaagagtt
ggttctcccgggcctaacggtaaccctggtgctgctggccccgctggtcctgctggtaaa
gacggtcctaagggagttcgtggtgactctggaaccccaggaagacagggagacgctggg
ctgcgtggagctgctggagcccctggcgagaagggagatgctggaggggatggtctccct
ggtcccgatggtccttcaggtccccagggtctggctgggacacgtggtattgttggtctg
cctgggcagcgtggagagaggggcttccctggccttcctggtccttctggagagcccggt
aagcagggagctcctggtgctggtggtgaccgtggaccccctgggcctgtggggcctcct
ggactgtctggaccttctggcgagcccggaagagagggcaacgctggatctgatgggccc
cctggtagagatggatccaccggagtcaagggtgagcgtggtaacactggtcctgcaggt
gcacctggcgcccctggcgctcccggtgcccccggccctgtcggccccctgggcaagcag
ggagacagaggagagggaggtgctcaagggcctgccggacccgctgggccagctggcgct
agaggaatggctggaccccaaggaccccgtggagacaagggagaggctggcgagacagga
gagaggggacagaagggacaccgtggcttcaccggtctgcagggtcttcccggacctcca
ggctccgctggagaccagggagctgctggacctgccggacctagtggtgctaagggaccc
cctggcccagtcggccccgctggtaaggatggatctaacggtcagcctggacccctcgga
ccccctggacctcgtggtcgttctggagaaactggccctgctggtccacctggtaacccc
ggaccccctggtcctcctggtcctcccggccctggcatcgacatgtctgcctttgctggc
ctgtctcagcctgagaagtctccggatcccctgaggtacatgagagctgacgaggcgtcc
agctccctgaggcagcacgacgtggaggtggactccacactcaagtccctcaacaaccag
atcgagaacctgcgcagccctgatggtagccagaagaaccctgcccgcacctgcagagac
ctcaaactgtgccacccagagtggaagagcggtgactactgggtggatcctaacattggt
agcacagctgatgccatcaaggtcttctgcaacatggagactggcgagacctgtgtgtac
cccagcatagccaacgtgcctcaaaagaactggtggacaagcaagagcaacgaccgcaaa
catgtctggttcggagagaccatgaatggaggattccacttcagctacgctgaggacggt
accaacgctgccagtatccagctgaccttcctgaggctgctgtccacggaagcgtctcag
agcctcacctaccactgcaagaacagcgtggcctatatggacacatccacgggcaacctg
aagaaggctctgctgctccagggctccaacgacgtggagatcagagctgagggaaacagc
cgcttcacctacagcgttgtggaggatggctgcaagaaacacacaggccagtggggaaag
actgtcttcgagtacaaaacacagaagacctcccgtctgcccatcgtggacattgctccc
atggacattggaggagcggaccaggagttcggtgtggatgtgggaacagtctgcttcttg
taa
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