Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139368774
Help
Entry
139368774 CDS
T10872
Name
(RefSeq) collagen alpha-3(IX) chain-like
KO
K08131
collagen type IX alpha
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04510
Focal adhesion
ocla04512
ECM-receptor interaction
ocla04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
139368774
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
139368774
09142 Cell motility
04820 Cytoskeleton in muscle cells
139368774
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
ocla00535
]
139368774
Proteoglycans [BR:
ocla00535
]
Extracellular matrix (ECM) proteoglycans
Others
139368774
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
139368774
NCBI-ProteinID:
XP_070964206
LinkDB
All DBs
Position
16:complement(55314925..55337111)
Genome browser
AA seq
678 aa
AA seq
DB search
MAMFSALGLLLLCQLLTSSTAQRPGPRGAVGPPGPPGPDGKDGTDGKDGPAGLSGKAGPK
GKAGGAGGPGNPGLPGLPGVDGLTGADGPAGKDGPPGEVGDAGPSGPGGPPGRGRPGAPG
PPGANGLEGGIGPQGPAGPEGLPGLSGPPGPDGPPGLPGALPDGSGDLLCPAICPPGPSG
PPGMPGFKGHTGHKGDKGELGKDGEKGNAGPPGPPGIPGTVGLQGPRGLRGLQGPMGAVG
DRGLPGFRGKPGTAGIIGKTGDAGEKGPEGFRGPKGEIGKIGPKGVSGGAGPKGEPGIPG
RDGKDGTQGLDGEKGDAGRNGVPGEKGPNGLPGLQGKAGAKGAKGGVGDPGEMGEAGPSG
EPGIPGDIGIPGERGEAGPRGVAGGVGPVGNIGVQGSKGFQGIKGALGDPGLPGPTGIRG
GFGERGPVGASGPKGDMGMAGADGLPGENGEPGPFGPVGQKGESGKRGELGPKGVVGPQG
ELGARGVPGKPGLMGFQGEQGLPGIAGKIGVPGKLASEQHIRELCGSMIDDQIAQLAANL
RRPLSPGQVGRPGAAGLPGKVGETGSIGHPGSRGPPGYRGLPGDLGDPGPRGDLGEQGDK
GPIGKAIEGPIGDQGYQGIPGVLGIVKDGRDGSPGDPGEPGEAGRTGRTGHSGSPGICDT
TACQGANVHGKTSNPKNH
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atggctatgttttcagctctcgggctgctcttgctgtgccagcttttgacatcatccaca
gcccagagacccggcccacgaggagcagtcgggccgccaggacccccgggacccgatgga
aaggatggcactgatggcaaagatggcccggctggactttcaggaaaagctggacccaag
gggaaagcagggggagcaggaggaccagggaacccaggcctgcctggcctccctggggtg
gacggattgacaggtgctgatgggcctgctgggaaagacggtcctccaggggaggtgggc
gacgctggaccttctgggccaggtggacctcctggcagagggagaccaggagctccaggg
ccacctggagccaatgggcttgagggcggaatcgggccacagggaccagcgggccctgag
ggtcttccaggattatccgggcctcccggccctgatggaccaccaggtcttcctggggct
ctccctgatggcagtggagatctgttgtgtcctgccatctgtcctcctggcccctctggc
cctccaggaatgcctggattcaagggtcacacagggcacaaaggagataagggagagctc
gggaaagatggagagaagggtaatgctggcccacctggtcctccagggattcctggcact
gtcggcctgcagggtcctcgtggtttgaggggacttcagggcccaatgggggcagtagga
gacaggggtttaccaggtttccgaggcaaacctggtactgctggcatcatcggcaagaca
ggtgatgctggagagaaaggaccagagggatttagagggccaaagggagagattggcaaa
attggtccaaagggagtttctggcggagcaggacccaaaggggagcccggtatcccaggc
agagacgggaaagatggcacccaaggactggacggtgagaagggagacgctggacggaat
ggggtacccggtgagaaaggacccaacggccttcctggtttacaaggaaaggctggcgca
aagggtgccaaaggaggagttggtgacccaggagagatgggagaggcagggccatctgga
gagccaggtattcctggcgacattggtatcccaggagagaggggcgaggcgggacccaga
ggagtggctgggggcgtcggaccagtgggcaacatcggggttcagggcagcaaaggcttc
cagggaataaagggggctcttggtgaccctggccttcccggaccaaccggaattcgcggc
ggatttggtgagaggggtccagttggagcatcaggccctaaaggagacatgggcatggca
ggagctgatggtttgcccggggagaatggagaacctggtccatttggtccagttggccaa
aaaggagagtctgggaagcgtggcgagctgggacctaaaggtgttgtgggaccacaggga
gagctcggagccagaggggttcctgggaaaccaggcctaatgggcttccagggtgaacag
ggtctgcctggaatcgctggcaagattggtgttcccggtaaactggcaagtgaacagcac
attagagaattgtgtggatctatgattgatgatcagattgcacagctggctgccaacctc
agaaggcccctgtcccctggtcaagtgggtcgccccggtgctgccggacttccagggaaa
gtaggagagactgggtctatcggtcaccccggctcccgcggacctcctggctacagagga
ctgcctggagacctgggagaccccggtcccagaggtgatcttggtgaacagggtgacaag
ggtcccattggaaaggccatcgaagggcccattggagaccaaggataccaaggtatccca
ggagtgcttggaatcgtcaaagacgggcgtgacggatccccaggagatccaggtgagcct
ggagaggcaggtaggacaggaaggactgggcactcgggctccccaggaatctgtgacact
accgcctgccagggggcaaatgtccatgggaaaacctccaatcccaagaaccattaa
DBGET
integrated database retrieval system
