Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139368832
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Entry
139368832 CDS
T10872
Name
(RefSeq) RNA-binding protein 39-like isoform X1
KO
K13091
RNA-binding protein 23/39
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ocla03041
]
139368832
Spliceosome [BR:
ocla03041
]
Common components
Common spliceosomal components
General mRNP proteins
139368832
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Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RBM39linker
RRM_MUD2_C
RRM_occluded
DUF8400
RRM_5
RRM_7
RRM_8
Motif
Other DBs
NCBI-GeneID:
139368832
NCBI-ProteinID:
XP_070964336
LinkDB
All DBs
Position
16:59125677..59136997
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AA seq
546 aa
AA seq
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MADDFDIEAMLEAPYRKDEIKSSSANGHEERSSKKKKRSHSRSSRSPSSDKRRSKSKDRK
KSRDRKRSKSREKKRSRSKERRRSGSHSRERAGRYRGRRSPFLGPKFNGGPGGKIGPPHA
NKLSRRRSRSRSPFKKDKSPVRQPIDNLTPEERDARTVFCMQLAARIRPRDLEDFFSAVG
KVRDVRMISDRNSRRSKGIAYIEFLEANSVPLAIGLTGQRLLGVPIIVQASQAEKNRAAA
MANNLQKGNAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETARSKGYGFIS
FADAECAKKALEQLNGFELAGRPMKVGNVTERTDSSTASSFLDNDELERTGIDLGTTGRL
QLMARLAEGTGLQIPPAAQQALQMSGSMHSSSIHFGNMAAGTDIQARLNPPPEAVANPAL
NLGPSMNQAMNLPTQPLATHCLQLSNMFSPQSENEPGWDIEIQDDVMEECNKHGGIVHIY
VDKNSPQGNVYVKCPTIPTAMAAVNALHGRWFAGKMITAAYVPLPTYHNLFPDSVTATQL
LMPSRR
NT seq
1641 nt
NT seq
+upstream
nt +downstream
nt
atggcagacgattttgacattgaggctatgctagaggctccatacagaaaggatgagatc
aagtcctctagcgctaatggacatgaggagcgcagtagtaagaagaagaagaggagccac
agtaggagtagtcggagcccgagctctgacaagcgcagaagcaagagcaaagacaggaag
aagagccgggacaggaagaggagcaagagtcgggagaagaaacgcagccgcagtaaggag
cgccgccgcagcggctcccatagcagggagcgtgccgggcgctacagaggacgccgcagc
ccctttttggggccgaaatttaacggtggtccaggagggaagattggcccaccacatgcc
aacaaactaagtcgtaggcgctcaagaagtcgtagtcccttcaagaaagacaagagtcca
gtaaggcaaccaattgacaacctgaccccagaggagcgggatgcccgtactgtgttctgt
atgcagctggcagccagaatcagaccacgagatctagaggacttcttctctgctgtcggg
aaagtgagagacgtgaggatgatctccgatagaaactccaggaggtcaaagggcatcgcc
tacattgagtttctggaggcgaattcggtcccattggccattggcttgactggacagaga
cttcttggagtgcccatcattgtccaggcctctcaggctgagaagaacagagcagcagca
atggccaataaccttcagaagggtaatgctggccccatgcggctgtacgtgggctctctg
cacttcaacatcacagaggacatgctgcgaggcatcttcgagcctttcggaaggattgag
agcatacagctgatgatggacagtgaaactgcacgatccaaaggatatggtttcatctca
tttgcagatgcagagtgcgctaagaaagcattggagcagttgaatggctttgagctggcc
ggacggcccatgaaggttggtaacgtgacagaacgcaccgactcctccaccgccagctcc
ttcctggacaacgacgagctggagaggacgggcattgacctgggcaccaccgggcgcctg
cagctcatggcccggctggcagagggtactggtcttcagattcctccagctgcacaacag
gctctacagatgagtggttccatgcactcctcttcaatccacttcggcaacatggcagct
ggtacagacatacaagccaggctgaacccaccccctgaagctgttgccaaccctgccctg
aacctgggtccaagcatgaaccaggccatgaacctcccaactcaaccactggctacacac
tgcctacagctgtccaacatgttcagcccacagtcggaaaatgagcctggttgggacatc
gagattcaagatgacgtcatggaggagtgcaacaaacatggtggaattgtccatatatat
gtcgacaagaactcacctcagggcaacgtgtacgtaaaatgccccactatcccaacagcg
atggctgcagtgaatgccctacatggacggtggtttgcaggtaaaatgatcactgcggcg
tacgtacccctcccaacctaccataaccttttccctgattcagtaacggccacccagcta
ctgatgccttcgcggcgataa
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