Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139369745
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Entry
139369745 CDS
T10872
Name
(RefSeq) opticin
KO
K08127
epiphycan
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
ocla00535
]
139369745
Proteoglycans [BR:
ocla00535
]
Extracellular matrix (ECM) proteoglycans
Small leucine-rich proteoglycan (SLRP) family
class III
139369745
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Ortholog
Paralog
GFIT
Motif
Pfam:
LRR_8
LRR_1
LRR_4
LRRNT
LRR_9
LRR_5
DUF3525
Motif
Other DBs
NCBI-GeneID:
139369745
NCBI-ProteinID:
XP_070965107
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All DBs
Position
17:complement(41397841..41423509)
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AA seq
331 aa
AA seq
DB search
MALLCVVVAFALTLLGPCPSVCAPQGGAEPDEQPYDLDDFDMNGETDWENLDLNGENYDY
EDLDQEIEVGTVAPPAPETPPPANMPPPEYEEEMTLSPRPTPPLAPVTLDFKGPGLFGPD
TGLGMPTCLLCVCISGSVYCDDANLEQIPPLPKDTTHFYGRFNSIRHVKNTDFINLNKLK
SIDLTGNQISGVDEDAFRPLSQLQDILLADNNLQALPELPPTLRYIDVRNNRLISNGLHT
DGFKEMSLLEFLYLSDNKLDYIPVPLPESLRVLHLQNNNIQNLHVDTFCNSHDRNYIRRS
LEDIRLDGNPVNINLFASSYICLPRLPIGSH
NT seq
996 nt
NT seq
+upstream
nt +downstream
nt
atggccctgctgtgtgtggttgtggcttttgccctgactctgctaggcccctgccccagt
gtgtgtgcccctcaggggggggcagagccagacgaacagccctatgacctggatgacttt
gatatgaatggagagacagactgggaaaacttggacctcaatggagaaaactatgactat
gaagacctagaccaagagatcgaggtggggacggtggccccccctgctcctgagacccct
cccccagccaacatgccccctcctgagtatgaggaggagatgaccctgtcccccaggccg
acccctcccctggctccagtaactctggacttcaaaggaccaggcctgtttggacccgac
actggcctgggtatgcctacatgtttgctgtgtgtgtgcatcagtggaagtgtatattgt
gatgatgctaacctggagcagattcctccactgcctaaagataccacacacttctacgga
cgcttcaacagtatcagacacgtcaagaacactgacttcatcaacctcaacaagctgaag
agcatcgacttaacagggaaccagatctctggtgtggatgaagatgcgttccgcccccta
tcacagctccaggacatcctattggctgataacaacctgcaggcgttgccagaactccca
cccaccctcagatacattgatgtgcgcaacaacagactgatcagcaatggactacataca
gatgggtttaaggagatgagcctgctcgagttcctgtatctgtctgataacaagctggac
tacatccctgtcccactacctgagagcctccgagtactacacctgcagaacaacaacatc
cagaatcttcatgtggacacattctgtaacagccacgaccgtaactacatacgtcgctcc
ctggaggacatcaggctggatggaaaccctgtcaacatcaacctgtttgcctcgtcctac
atctgcctgcctcgcctgcctatcgggagtcactga
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