Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139369838
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Entry
139369838 CDS
T10872
Name
(RefSeq) small nuclear ribonucleoprotein E
KO
K11097
small nuclear ribonucleoprotein E
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
139369838
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ocla03019
]
139369838
03041 Spliceosome [BR:
ocla03041
]
139369838
03032 DNA replication proteins [BR:
ocla03032
]
139369838
Messenger RNA biogenesis [BR:
ocla03019
]
Eukaryotic type
mRNA processing factors
3' end processing
U7-dependent histone pre-mRNA processing factors
139369838
Spliceosome [BR:
ocla03041
]
Complex A
U1 snRNP components
Sm proteins
139369838
U2 snRNP components
139369838
Complex B
U1 snRNP components
139369838
U4/U6.U5 tri-snRNP components
139369838
Complex C
U2 snRNP components
139369838
DNA replication proteins [BR:
ocla03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (fungi)
Sm core complex
139369838
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
Hfq
Motif
Other DBs
NCBI-GeneID:
139369838
NCBI-ProteinID:
XP_070965219
LinkDB
All DBs
Position
17:complement(54905798..54908221)
Genome browser
AA seq
92 aa
AA seq
DB search
MAYRGQGQKVQKVMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDD
AEEVHMKTKNRKPLGRIMLKGDNITLLQSVAT
NT seq
279 nt
NT seq
+upstream
nt +downstream
nt
atggcgtacagaggacaagggcagaaggtccagaaggttatggtgcagccaatcaacctt
attttcaggtatctacagaaccgttctcggatacaggtgtggctgtatgaacaagtgaac
atgcggatagagggctgcatcatcggctttgacgagtacatgaacctggttctggatgac
gctgaggaggtccacatgaagaccaagaacaggaagcccctggggaggatcatgctgaaa
ggtgataacatcaccttactacagagtgttgccacttaa
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