Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139370026
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Entry
139370026 CDS
T10872
Name
(RefSeq) CCR4-NOT transcription complex subunit 2-like isoform X1
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
139370026
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ocla03019
]
139370026
Messenger RNA biogenesis [BR:
ocla03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
139370026
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
139370026
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
139370026
NCBI-ProteinID:
XP_070965423
LinkDB
All DBs
Position
2:complement(54607194..54635694)
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AA seq
551 aa
AA seq
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MFSATRKKFVEGVESDYPDEGMYYSQPLPFSHRSDKDLSALSARSHVPSTAPFELEMLSS
PSPSSSGQLSQLGASLYGPQSALGFSIRGMGNNTQLNRSLTQGTQLPSHITPTTGVPTMS
LHTPPSPSRGILPMNSRNMLNHSQVGQGIGMVSSRTNSMGSSGLGSPNRSSPSIICMPKQ
QPARQPFTINSMSGFGMNRNQAFGMNNSLSSNIFNGTDGSENVTGLDLSDFPALADRSRR
EGSGNPTPLLNPLAGRAPYEASSLHLMTSSVGMVTKPSNEPTQDFSIHNEDFPALPGPNY
KDPTLSNDDSKTNLNSTGKSTSSADGPMFPGDKTTSAQNNNQKKGIQVLPDGRVTNIPRG
MVTDQFGMIGLLTFIRAAETDPGMVHLALGSDLTTLGLNLNSPENLYPKFASPWASAPCR
PQDIDFHVPSEYLTNIHIRDKLAAIKLARYGEDLLFYLYYMNGGDLLQLLAAVELFNRDW
RYHKEERVWITRAPGMEPTLKTNTYERGTYYFFDCLNWRKVAKEFHLEYDKLEERPHVPS
TFNYNPAQQAF
NT seq
1656 nt
NT seq
+upstream
nt +downstream
nt
atgttcagtgctacgagaaagaagtttgtagagggggtcgaaagtgactaccctgatgag
ggcatgtactacagccagccgttgccgttctcacatagatcggacaaagacttaagcgct
ctgtctgctcgatcacacgtccctagtacagctccctttgaacttgaaatgctctcgtct
ccctcaccgtcgtcatcaggtcaactgtcccagcttggtgccagtttatacggcccacag
agtgcactaggcttctcgataaggggcatgggaaacaacactcagttaaaccgcagctta
acgcaaggcacccagctaccgagccatatcacccccaccacgggggtgcccaccatgtcc
ctccataccccgccctcgccaagcaggggaatcctgccgatgaactcgaggaacatgctg
aaccactcccaggtgggccagggcatcgggatggtcagcagcaggaccaacagcatgggc
agctcagggcttggcagccccaaccgcagctcccccagcatcatctgtatgcccaaacag
cagcctgcacggcagcccttcaccatcaacagcatgtcaggattcgggatgaaccggaac
caggcgtttgggatgaacaactcgttatcaagcaacatcttcaatggcacagacggtagt
gaaaacgtgacggggctagacctgtccgacttccctgctttagcagacaggagccggagg
gaaggaagcggaaacccaacgccacttctcaacccactagctggaagggccccctatgaa
gcctcttctcttcatctcatgacctcatcagttggcatggtgacgaagccatcgaatgag
ccgacgcaggatttctccatccacaacgaggacttccctgcactgcctggtcccaactac
aaggaccccacgttgagcaatgatgacagcaagacaaacctaaactctacaggcaagagc
acgtccagtgcagatggacctatgttccctggagacaagacgacctcagcacagaacaac
aaccagaagaaagggatccaggtgttacctgacgggcgggtgacgaacattcccagggga
atggtgacggaccagtttggaatgatcggcttgctgacatttattcgagcggcggagacg
gacccaggcatggtgcacctggcgctgggaagtgacctcacaacattgggactcaacctc
aactctccagaaaacctgtaccccaagtttgcttccccctgggcatcagcaccgtgtcga
cctcaagacattgacttccacgtcccgtctgagtacttaaccaacattcacatacgggac
aagctggcagctattaaactggctcgttacggtgaagacctgttgttctatctgtactac
atgaacggaggagacctgctacagctcctggcagcagtagagctcttcaaccgggactgg
cggtaccacaaggaggagcgggtgtggatcacgcgggcgccgggtatggagcccacacta
aagaccaacacctacgagaggggaacctactacttctttgattgtcttaactggaggaag
gtagccaaggagttccacctggagtacgacaagctagaagagaggccccacgtcccgtct
accttcaactacaatccagcccagcaggccttctga
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