Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139370231
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Entry
139370231 CDS
T10872
Name
(RefSeq) transitional endoplasmic reticulum ATPase-like
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04137
Mitophagy - animal
ocla04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
139370231
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
139370231
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ocla03019
]
139370231
03009 Ribosome biogenesis [BR:
ocla03009
]
139370231
04131 Membrane trafficking [BR:
ocla04131
]
139370231
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ocla04147
]
139370231
Messenger RNA biogenesis [BR:
ocla03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
139370231
Ribosome biogenesis [BR:
ocla03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
139370231
Membrane trafficking [BR:
ocla04131
]
SNARE
SNARE associated proteins
Others
139370231
Autophagy
Aggrephagy
Other aggrephagy associated proteins
139370231
Exosome [BR:
ocla04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
139370231
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_16
AAA_5
CDC48_2
AAA_22
AAA_33
AAA_2
TIP49
RNA_helicase
AAA_14
NPHP3_N
AAA_28
nSTAND3
ATPase
AAA_17
Mg_chelatase
Vps4_C
Parvo_NS1
ATPase_2
AAA_18
AAA_7
IstB_IS21
ABC_tran
ResIII
AAA_24
DUF815
SLFN-g3_helicase
Sigma54_activat
Viral_helicase1
TsaE
NACHT
NB-ARC
Rad17
KAP_NTPase
Zot
Motif
Other DBs
NCBI-GeneID:
139370231
NCBI-ProteinID:
XP_070965685
LinkDB
All DBs
Position
17:9735213..9757622
Genome browser
AA seq
802 aa
AA seq
DB search
MPAPGGTDPKGEDFSTAILKQKHRPNRLVVDEAHNEDNSIVSLSQAKTEELQLFRGDTVV
LRGRKRRETVCIVLTDDTCPDERVRMNRVTRNNLRVRLGDVISVHACPDVKYGVRIHVLP
IDDTIEGLTGNLFDVFLKPYFLEAYRPVHKGDIFLVRGGMRAVEFKVVETDPAPHCIVAP
DTVIHCEGQPINREDEEESLTDVGYDDIGGCRKQLAQIKEMVELPLRHPGLFKAIGVKPP
RGILLYGPPGTGKTLVARAVANETGAFFFLINGPEIMSKMAGESESNLRKAFEEAEKNSP
AIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKQRTHVIVMAATNRPNSIDPALR
RFGRFDKEIDIGIPDSTGRLEILQIHTKNMKLSDDVDLERVSMDAHGHVGSDLAALCSEA
ALQAIRKKMTLIDLEDDTIDAELLNSLAVTNDDFRWALGQSNPSALRETVVEVPNVNWED
IGGLGEVKRELQELVQYPVEYPDKFLKFGMTPSRGVLFYGPPGCGKTLLAKAIANECQAN
FISIKGPELLTMWFGESEANVRDVFDKARQAAPCILFFDELDSIAKSRGGGAGDAGGAAD
RVINQILTEMDGMSNKKNVFIIGATNRPDIIDSAILRPGRLDQLIYIPLPDTASRTAILN
ANLRKSPIARDVDLAYLSGITQGFSGADLTEICQRACKLAIREAIEAEIKAERQRQTHPG
TAMDEDCDPVPEIRKDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGFGNFRFPSGSQ
SGGQGSGSGGQFRDEVEDDLYQ
NT seq
2409 nt
NT seq
+upstream
nt +downstream
nt
atgcctgcccctggaggaacagatcctaagggggaggatttctccactgctatcctgaag
cagaaacacagacccaatagactggtggtggatgaagcccacaatgaagacaacagcatc
gtcagcctctcacaggcgaagacagaggagctgcagttgttccgtggcgacacggtggtc
ctgcgggggaggaagcggcgtgagacggtgtgtatcgtgttgacagacgacacctgtcca
gacgaacgcgtccgcatgaaccgcgtcacacgcaacaacctgagggtacgcctcggtgat
gtcatcagtgtccatgcatgcccagatgtgaagtacggcgtgcgtatccatgtcctgccg
atagatgacaccatcgaagggttaacgggaaacctgttcgacgtcttcctgaaaccctat
ttcttggaagcctatcgacctgtacacaaaggcgacatcttcctggtgcgagggggcatg
cgggctgtggagttcaaggtggtggagacagaccccgccccccactgcatcgtcgccccg
gacaccgtcatccactgcgagggacagccaatcaacagagaggacgaggaggagagtctg
actgacgtaggctatgatgacattggaggttgtcgtaaacagttagctcaaatcaaagaa
atggtggagcttcccctcagacatcctggactattcaaggctataggagtcaagcctccc
aggggtattctgctgtatggacctccaggtacagggaagacactggtcgcccgggccgtc
gccaacgagactggagcattcttcttcctcatcaatggtcctgagatcatgagtaagatg
gccggggagtcagagagcaacctgaggaaagccttcgaggaggcagagaaaaactctccc
gccattattttcatagacgaactggattctatcgctcctaagagagagaagacccatggg
gaggtggagaggcgtatcgtatcacagctcctcaccctgatggatggactgaagcagaga
actcacgttattgtcatggcagccaccaacagacccaacagcatcgaccctgccctgaga
cgcttcggcaggtttgacaaagagatcgacatcggcatcccagactccactggtagactg
gagatactgcagattcacaccaagaacatgaagctatctgacgacgtggacctggagagg
gtttccatggatgcgcatggccatgtggggtcagacctggcagctctgtgttctgaggcg
gctctgcaggccatcaggaagaagatgaccctgattgatctggaggacgacaccattgat
gctgaactgctcaactcactggcagttaccaacgatgacttcaggtgggcgttggggcag
agtaacccgtcagctctgagggagacagtagtggaggttcctaatgttaactgggaggat
ataggaggactgggagaggtcaagagagaactgcaggaactagtacagtacccagtggag
tacccagataagttcctgaagttcggtatgaccccgtcacgaggagtgttattctatgga
cccccaggctgtggaaagaccctgctagccaaggcgattgctaacgagtgccaggccaac
ttcatctccatcaagggacctgagctgctcaccatgtggttcggcgagtcagaggctaat
gtcagggacgtcttcgacaaggccagacaggcggccccctgcatcctgttctttgacgag
ctggactccattgccaagtccagagggggcggagccggggacgcagggggcgcggccgac
agggtcatcaaccagattctcacggagatggacggaatgtccaacaagaagaacgtcttt
attataggagctaccaacagacctgatataatagactctgctatcctccgtccagggagg
ctggatcagctcatctacatccctctaccagacacagcctcccgtaccgccatcctcaac
gcaaacctacgcaagtcccccatcgccagagatgtagacctggcctacctgtctggtatc
acccagggtttcagtggggcagacctgacagagatctgccagagggcctgtaagctggcc
atcagagaggccatagaggctgagatcaaagcagagcgccagagacagacccacccaggc
accgccatggatgaggactgtgaccctgttccagagatcaggaaggatcactttgaagag
gccatgaggttcgcccggcgctccgtcagcgacaacgatatcaggaagtatgagatgttc
gcccagacactacagcagagcagaggctttgggaacttcaggttcccctctggctctcag
tccggaggtcaagggtcggggtcaggggggcagttcagagacgaggtagaggacgacctc
taccagtga
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