Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139370319
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Entry
139370319 CDS
T10872
Name
(RefSeq) collagen alpha-1(XVII) chain-like
KO
K07603
collagen type XVII alpha
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
139370319
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Gene cluster
GFIT
Motif
Pfam:
Collagen
FlgT_N
Motif
Other DBs
NCBI-GeneID:
139370319
NCBI-ProteinID:
XP_070965824
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Position
17:13873159..13902357
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AA seq
1630 aa
AA seq
DB search
MDNLTTTKIVNAGAGGKVVKETVTTTTRLTSLPPTSGGLSSRSGLLSTGGGEPTSRAITG
GSSSVLVSSAAAGSVGGAKSGYGGGSVSKSTTITTIESPSLSSGASGASAPAFRSLGASG
ASFGASKTSGSLSVSGGGLMSSSSSSFFTGSSSGGSSSCFVSSSKGTGAGGGGFVTGSSS
GFVSSSKGAGAGVGGDSFVTGSSSGSSSGFASSSGAGIGGGDSSSAKMSAGGLGSVTVST
VTRSNYSSLAGAGSGGVKRGGAQGSASSALSYSPTPTERKSMTSTMIARSMGYEGRSSGN
SSPEYTRREYAAESAVASKPTRGRSHSRESEIRCRLQSASPTAKRWTELDDVKRLLKGSR
SSSISPPRSPTSTLPIPRKASVETRTMPNSSQSGQYDSATLDSGMPSYVWSGPTAGGYGY
HSNAINRSPTSTLQHSPTTLTATGLQNNLALSSTSMNSGLSASSTVHGMQNNLASTTGGI
LTANGVNAQTVYGVQKNVTSTGVSTTTAAPSTPASDEVFAKEYKFMLLEKEKAPVKKETE
RLIMAKDTGKQFSSAATAIAYSEDSLKKEKKKVSSFVETATARTTETNAGSLTKVSTKDK
ATYAEIRKDESGGGMGFWSCCSWLKWLLGILLGLLLLLGLLLGLIALAEEVKRLKARVDA
LEQASSSSSAHSSRLSSSSAINIIDPLESAYMDKTSSPSSTTLLRTDNGINLGVAAGAGP
GSANGPAQDPVALQRAVQQIVRTELQSDTVRATLAHSMKGARGEPGTKGDQGAPGVKGDN
GFPGLPGPPGQMGHSGLEGPRGPKGNAGEAGAEGPPGQKGREGPTGSRGEPGPPGFGEKG
DKGSPGEPGGPGPAGTAGPVGPKGSVGGQGATGIPGTPGPQGFRGEGGAPGPKGEKGPAG
PPGNKGEPGEKGLRGTSGDPGQRGPPGPDGANGSKGPVGAPGADGEKGSRGDKGSDGLPG
PRGPAGPPGDSGLPGIPGLQGPPGIPGNPGQPGGKGEAGESGRIINAAGSSSVAIPGPPG
SPGPAGVSGSPGLSGPVGPAGLPGTPGPRGERGEEGEKGDQGKPGITIQTVETTERRAPV
ASLPGPPGPPGPPGEPGPQGKGPPGPEGPQGVPGVGVPGPRGDKGEPGSFVPNSGTFFAG
PPGPAGPTGLPGSPGTPGPQGYQGDPGQPGLPGVPGDPGVGFPGPQGQPGGPGPEGDSGP
PGPQGPEGPEGQPGPKGEAGVPGAPGIPGYSSGGLSRSSPGAPGPPGPPGAPGHDGPPGS
GTPDVRQYITEYLKSDGVREYMSGPPGPPGVPGPPGDGSVESVDDLASRVIAYIQSGGIA
SGVPGPPGPPGAPGGGSTSLNDIISLLQSEEVRRYVVGPPGPAGPPGIPGIPWRGGYGFN
THEVAGRVLTLMNDAEYRGALGAQGPPGPPGVPGPAGPQGPAGPSGQASYSSSGYRLEEV
KDYIQSGLRGGMFGPPGPPGPPGPQGHKGEQGNSGYGHAFDHRTSEGRRLAETETDFSNI
AVRVTDYIKYHGLLRDVVENRSQLEKSQVVQGPPGPPGPPGAPGFSRVFGSHSNVTDLME
YIRDHGNTVGPPGRPGQKGDIGHTGHKGERGLDGIPGRAGLPGLEWKRGGKGEEGEYTLV
TNRRKRNVGV
NT seq
4893 nt
NT seq
+upstream
nt +downstream
nt
atggacaatctaacgacaaccaagattgtaaatgctggtgccggtggcaaggtcgtcaaa
gaaacagtaaccacaacaacccggttgacatcactgccgccaacctcaggtggtctctct
tcgaggagcgggctgctctctactggaggaggagagcctaccagtagagccatcacagga
ggcagtagctcagtgctagtatcctctgctgcagccgggtctgtgggtggagctaagtct
gggtacggagggggatccgtcagcaaatcaaccaccattaccactatagagtccccctct
ttatcctccggtgcttcaggggcctctgcgccagctttccggtctttaggggcttcgggg
gcatcgttcggggcgagcaagaccagcggctctctttccgtttctggagggggtcttatg
tctagctccagttccagttttttcactggttccagttctggtggttccagttcttgtttt
gtctctagttccaaaggaacaggagcaggaggaggcggttttgtcactggttccagttct
ggttttgtatctagttccaaaggtgcaggagcaggagtaggaggagacagttttgtcact
ggttccagttctggttctagttctggttttgcctctagttctggtgccggaatcggagga
ggggattcttctagtgccaaaatgtcagccggcggcttgggctctgtgaccgtttccacg
gttaccaggtccaactacagctccttggcaggggcgggttcagggggcgtgaagaggggt
ggggcacaggggtctgcatcctctgctctcagctactcccccacccccacggagagaaag
agcatgaccagcaccatgatcgcccgctccatgggctacgaaggaagatccagtggaaac
tcatctccggaatacacaaggagagaatatgctgcagaaagtgcggttgccagtaaaccc
accagagggcggagccacagcagggagagtgagatcagatgcagactgcagagtgcctct
cccactgctaaaagatggactgagctggatgatgtgaagcggctgctgaaggggagtcgc
tccagcagcatcagcccccctcgctcccccaccagcaccctccctattcccaggaaggcc
agcgtagagaccagaaccatgccaaacagctcccagtcaggccagtacgacagtgccacc
ctggactcaggaatgccttcctacgtgtggtcaggccccacggctggaggctatggttac
cacagcaacgccatcaaccggtcccccacctccaccctccaacactcacccaccacactc
acagccacagggcttcagaacaacctggccctcagctctacatccatgaactctggactc
tctgcctctagcactgttcatggtatgcagaataacctggcctccaccactggcggcatc
ctaacagctaatggagtcaacgcacaaacagtctatggtgtgcagaaaaatgtcacaagc
acaggggtgtccacaaccacagcggcacccagcactcctgccagtgacgaggtcttcgcc
aaagaatacaaattcatgctgctggagaaagagaaagctcccgtcaaaaaggagacggag
agactcatcatggccaaagataccggcaagcagttctcctctgctgccactgctattgcc
tattctgaggactcactgaagaaggagaagaagaaggtgtccagctttgtggagacagct
acagccagaaccacagaaacaaacgctggatccttgacgaaagtgtcaacgaaagacaaa
gcaacctatgcagagatacgtaaggacgagtctggaggaggtatgggcttctggtcttgc
tgctcctggttgaagtggctgctgggcatcctgctgggtcttctgctcctcctggggctc
ctcctgggactcatcgccctggccgaagaagtcaaacgtcttaaagctcgtgtggacgcc
ttggaacaagcctccagctcttcctcagcacattctagtcgcctctcctcctcctcagcc
atcaacatcatagaccctctggagtctgcatacatggacaagacctcctctccctcctct
accacactgctccgcactgataatggtatcaatctgggagtggcagcaggagcaggtcca
ggatcagctaacggaccagcccaagaccctgtagctctgcaaagggcagtacagcagata
gtcaggactgagctgcagtccgatactgtacgagcaacacttgcacactcaatgaaagga
gcgagaggagagcctgggaccaaaggtgaccaaggtgctccaggagtcaaaggtgataat
ggattccctggcctaccaggtcctccaggtcagatgggtcacagtggactggagggcccg
aggggacctaaaggaaatgcaggtgaagctggtgcagaaggccccccaggccagaagggc
cgagaaggaccaacgggatcacgtggagagcctggtcctccagggtttggagagaaaggg
gacaaaggttctcctggtgaacccggagggcctggacctgctggcactgctgggcctgtt
gggcctaaagggtcagtgggtggtcagggtgctacaggtatcccaggaactcctggtcca
cagggtttccgaggtgaaggaggcgctccaggaccgaaaggagagaagggaccagctgga
cctccaggaaataagggcgagcctggagagaaaggactccgtggaacatcaggtgaccca
ggtcaaagaggacctccgggaccagacggcgcaaatggatctaaaggacctgtaggtgct
cccggggctgacggtgaaaaaggctctagaggtgacaagggatcggatgggttaccaggt
cccaggggaccagcaggacctccaggagattcaggcctcccaggcattcctgggcttcaa
ggtccaccaggtataccaggtaatcctggtcagcctgggggtaaaggtgaagctggagaa
tctggtagaatcatcaatgcagctggttccagttcggttgccatccccggacctccaggc
agccccggacccgctggtgtttccggatcccctggactctcaggtcctgttggccctgct
ggtcttcctgggacgcctggtcccaggggagaaaggggagaggaaggagaaaagggagac
cagggaaagcctggtattactatacagactgtggaaaccacagagagacgtgcacctgtg
gctagtcttcctggcccacctggccctccagggccaccaggagaaccaggtccccagggt
aagggtcccccaggtcctgaaggtcctcaaggagtgccaggtgttggtgtgcccggcccc
cgaggagataagggagagccaggtagctttgtgccaaactcaggaaccttctttgctggg
cccccaggacctgctggcccaactggtctaccgggatcaccaggtacaccaggaccccag
ggttaccaaggtgacccaggtcagcccggtttaccaggagttccaggagatcccggtgtc
ggtttccctggaccccagggacaacctggaggtccaggaccagaaggggacagtggacct
ccagggccccaaggtccagagggccccgagggacaaccgggtccaaaaggtgaggctggc
gttccaggtgctccaggtatccctggctactccagtggtggattatccaggagttcccct
ggagcaccaggtccacctggacctcccggggctcccggccatgatgggccacctgggtct
ggaacaccggacgtccgccaatacatcacagaatacctcaagagcgatggtgtcagggag
tacatgtcgggacctccgggtcctccaggtgtaccgggaccccctggtgacggatcagtg
gagtcagtggatgatcttgctagtcgcgttatcgcgtacatccagagtggcggtattgct
agtggggtgcctggacctccaggcccgcctggcgctccaggtggaggcagtacatcgcta
aatgacatcatcagccttctacagagtgaggaagtgcgacgctacgtcgttggtcctcct
ggccctgctggacctcctggcatcccagggatcccatggagaggaggctatggctttaat
acccatgaggtggctggacgggtcctcactctaatgaatgatgctgaatacagaggtgcc
ttgggcgctcaggggcctcctgggccacctggtgtcccaggccctgctggccctcaaggc
cctgctggtccttcaggacaggcctcctacagcagctctggatacaggctggaggaggtc
aaggactacatacagagtggtctaagagggggaatgtttgggcccccaggccccccaggt
ccccctggacctcagggacacaagggagagcagggtaactctgggtacggccacgccttt
gaccacaggaccagcgagggaagaaggctggctgagactgagacagacttctccaatata
gcggtccgagtgactgactacatcaagtaccatggtctgttgagggacgtggttgagaac
cggtctcagctggagaagtcacaggttgttcaaggacccccaggaccccctggccctccc
ggtgctccaggattcagccgtgtgtttggttcccatagtaacgtcactgaccttatggaa
tacatcagagaccatggaaacactgtgggaccccctggaaggccaggacagaaaggggac
ataggacatacaggtcataaaggcgagagaggactggatggcattccaggaagggcaggc
ctccctggtctggagtggaaaagggggggaaagggggaggaaggagaatacacacttgtg
accaacagaagaaagaggaatgttggcgtttga
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