Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139370385
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Entry
139370385 CDS
T10872
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
139370385
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ocla03021
]
139370385
03036 Chromosome and associated proteins [BR:
ocla03036
]
139370385
Transcription machinery [BR:
ocla03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
139370385
Coactivators
SAGA/TFTC/STAGA complex
139370385
Chromosome and associated proteins [BR:
ocla03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
139370385
STAGA complex
139370385
TFTC complex
139370385
SAGA complex
139370385
SLIK complex
139370385
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
WD40_CDC20-Fz
Beta-prop_EML_2
EIF3I
Beta-prop_TEP1_2nd
TFIID_NTD2
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
WD40_MABP1-WDR62_1st
Beta-prop_SCAP
NBCH_WD40
WDR90_beta-prop_4th
Beta-prop_IFT122_1st
ANAPC4_WD40
Beta-prop_RIG_2nd
Beta-prop_HPS5
Beta-prop_IFT140_1st
Beta-prop_DCAF4
RMC1_N
Beta-prop_EIPR1
Beta-prop_SPT8
Beta-prop_WDR19_1st
Beta-prop_Vps41
WD40_like
PEP5_VPS11_N
Beta-prop_WDR75_2nd
PROPPIN
Beta-prop_IP5PC_F
WD_LRWD1
Nbas_N
Beta-prop_ELP1_1st
Motif
Other DBs
NCBI-GeneID:
139370385
NCBI-ProteinID:
XP_070965931
LinkDB
All DBs
Position
17:complement(17484494..17488362)
Genome browser
AA seq
607 aa
AA seq
DB search
MKRVRTEQIQYTVAQYLKRRQYVDTESSLKGTKLSQSAEEMAANLTVQTESGCANIVSAA
PCQADPQQYETQFSRLRNFLSEAVLPWGQEVSCVLYPLFVYLHLDMVRCSLKGAVDGFYS
RFHSLFLGDAEQRSTVEQLRHVLTQQDVTANPKLLALLDHKYVVNLTEPAYSYLLRYLQS
EDNSTLCRALSTHIQVEVTSSPRTDYQLYGTTGAGATGATTTAPNSTSSWSGADGPERGE
AAGVEVPTGIPQSEAALEALQDCIKKVREGPPSLTTVCFYAFQHTEQLLNTAVVSADSKL
LAAGFDSSAVKLWSLRARKLKARPHRTDVSHIRLACDVLEEEADEEDGSGSEIKTLRGHS
GPVFRTAFLTDSSGLLSCSEDTSIRYWDLGSFTNTALYQGHAYPVWDVDVSPCSLYFASA
SHDRTARLWTFSRTYPLRLYAGHLADVDCVKFHPNSNYLATGSTDKTVRLWSTQQGASVR
LFTGHRGPVLSVAFAPNGKYLASAGEDQRVKLWDLASGALVKDLRGHTDSVTSLSFSPDS
SLVASSSMDNSVRVWDIRNSHSTTHADGSSSELVGLYTGNTSNVLNVQFMACNLLLVTGT
AQEKHGQ
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgggtacgcacggagcagatccagtacactgtagctcagtacctgaagcggagg
cagtatgtggacactgaaagttccttgaaggggactaaactgtcccagtccgcagaggag
atggctgccaacctcacagtgcagacagagtcggggtgtgcaaacattgtctctgctgcc
ccttgccaagctgaccctcaacagtacgagacccaattttccagacttcgcaattttctt
tcagaagcggtgttgccatggggccaggaggtcagctgcgtcctgtacccactcttcgtt
tacctccacctggacatggtgcgctgcagcctgaagggggcggtggatggcttctacagc
cgcttccacagcctcttcctgggggacgccgagcagcgctccaccgtggagcagcttcgc
catgtcctcacccagcaggatgtcaccgcaaaccccaagctcctggcgttactcgaccac
aagtacgtggtgaacctgacggagccggcctacagttacttgttacgctacctgcagagc
gaagacaacagtaccctctgcagggccctcagcacccacatccaggtagaggtcacctcc
tcaccacgcaccgactaccagctgtacgggacgacaggtgcgggagctaccggggccacc
accacggcccccaactctacctcctcgtggtcgggtgcggatggccctgagcgaggagag
gcggcaggggtggaggtccccacagggatcccgcagagcgaggcggccctggaggcactg
caggactgcattaagaaggtgcgtgaggggccgccgtcactcaccaccgtgtgcttctat
gccttccagcacacggagcagctactgaacacggcagtggtgtcggctgacagcaagctg
ctggccgccgggttcgacagctcggccgtcaagctatggagtcttagggccaggaaactg
aaggccaggccacaccggaccgacgtgtcacacatccgcctagcatgtgacgtgctggaa
gaggaggcagatgaagaggacggctcgggcagcgagatcaagaccctgcgtggccacagc
ggtccggtgttccgcacggccttcctgacagacagctcgggcctgctgtcctgctcggag
gacacgtccattcgctactgggacctgggcagcttcaccaacacggccctctaccagggt
cacgcctaccccgtctgggacgtggacgtcagcccctgcagcctctactttgccagcgcc
tcccacgaccgcaccgcccgcctctggaccttctccaggacctaccctctgaggctctac
gccggccacctagcggacgtggactgcgtcaagttccaccccaactcaaactacctggcc
acaggctcaacggataaaaccgtccgcctctggagtacccagcagggggcgtcagtgcgc
ctgttcacaggccaccgcggccccgtgttgtccgtagccttcgcgcccaatgggaagtac
ctggcatcggcgggcgaggaccaacgggtgaagctgtgggacctggcctcaggggctctg
gtcaaggacctgaggggccacacggacagtgtcaccagcctgtcgttcagccccgacagc
agcctggtggcctcctcttccatggacaactcagtcagagtgtgggacatccgaaactcc
cacagcacgacccacgcggatggctcgtccagcgagctggtggggctctacacaggcaac
accagcaacgtgctcaacgtccagttcatggcctgtaacttgctcctggtgacgggaaca
gcgcaggagaaacatggacagtag
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