KEGG   Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139370385
Entry
139370385         CDS       T10872                                 
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
ocla  Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:ocla00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    139370385
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ocla03021]
    139370385
   03036 Chromosome and associated proteins [BR:ocla03036]
    139370385
Transcription machinery [BR:ocla03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     139370385
   Coactivators
    SAGA/TFTC/STAGA complex
     139370385
Chromosome and associated proteins [BR:ocla03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     139370385
    STAGA complex
     139370385
    TFTC complex
     139370385
    SAGA complex
     139370385
    SLIK complex
     139370385
SSDB
Motif
Pfam: WD40 Beta-prop_WDR3_1st Beta-prop_WDR5 Beta-prop_THOC3 WD40_Prp19 Beta-prop_IFT122_1st WD40_WDHD1_1st Beta-prop_WDR3_2nd Beta-prop_CAF1B_HIR1 WD40_CDC20-Fz Beta-prop_EML_2 WD40_Gbeta Beta-prop_WDR36-Utp21_2nd EIF3I Beta-prop_TEP1_2nd TFIID_NTD2 WD40_MABP1-WDR62_2nd WDR55 Beta-prop_WDR90_POC16_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_EML Beta-prop_WDR75_1st Beta-prop_TEP1_C WD40_MABP1-WDR62_1st Beta-prop_SCAP Beta-prop_Aladin NBCH_WD40 DSE1_N WDR90_beta-prop_4th ANAPC4_WD40 PAC11 Beta-prop_RIG_2nd Beta-prop_WDR41 CFAP251_N Beta-prop_NOL10_N Beta-prop_VPS8 Beta-prop_HPS5 Beta-prop_IFT140_1st RMC1_N Beta-prop_DCAF4 Beta-prop_EIPR1 ASA1 Beta-prop_SPT8 Beta-prop_Vps41 Beta-prop_WDR19_1st Tricorn_2nd PEP5_VPS11_N Beta-prop_WDR75_2nd WD40_like PROPPIN BCAS3_WD40 Beta-prop_IP5PC_F PD40 WD_LRWD1 Nbas_N Beta-prop_ELP1_1st
Other DBs
NCBI-GeneID: 139370385
NCBI-ProteinID: XP_070965931
LinkDB
Position
17:complement(17484494..17488362)
AA seq 607 aa
MKRVRTEQIQYTVAQYLKRRQYVDTESSLKGTKLSQSAEEMAANLTVQTESGCANIVSAA
PCQADPQQYETQFSRLRNFLSEAVLPWGQEVSCVLYPLFVYLHLDMVRCSLKGAVDGFYS
RFHSLFLGDAEQRSTVEQLRHVLTQQDVTANPKLLALLDHKYVVNLTEPAYSYLLRYLQS
EDNSTLCRALSTHIQVEVTSSPRTDYQLYGTTGAGATGATTTAPNSTSSWSGADGPERGE
AAGVEVPTGIPQSEAALEALQDCIKKVREGPPSLTTVCFYAFQHTEQLLNTAVVSADSKL
LAAGFDSSAVKLWSLRARKLKARPHRTDVSHIRLACDVLEEEADEEDGSGSEIKTLRGHS
GPVFRTAFLTDSSGLLSCSEDTSIRYWDLGSFTNTALYQGHAYPVWDVDVSPCSLYFASA
SHDRTARLWTFSRTYPLRLYAGHLADVDCVKFHPNSNYLATGSTDKTVRLWSTQQGASVR
LFTGHRGPVLSVAFAPNGKYLASAGEDQRVKLWDLASGALVKDLRGHTDSVTSLSFSPDS
SLVASSSMDNSVRVWDIRNSHSTTHADGSSSELVGLYTGNTSNVLNVQFMACNLLLVTGT
AQEKHGQ
NT seq 1824 nt   +upstreamnt  +downstreamnt
atgaagcgggtacgcacggagcagatccagtacactgtagctcagtacctgaagcggagg
cagtatgtggacactgaaagttccttgaaggggactaaactgtcccagtccgcagaggag
atggctgccaacctcacagtgcagacagagtcggggtgtgcaaacattgtctctgctgcc
ccttgccaagctgaccctcaacagtacgagacccaattttccagacttcgcaattttctt
tcagaagcggtgttgccatggggccaggaggtcagctgcgtcctgtacccactcttcgtt
tacctccacctggacatggtgcgctgcagcctgaagggggcggtggatggcttctacagc
cgcttccacagcctcttcctgggggacgccgagcagcgctccaccgtggagcagcttcgc
catgtcctcacccagcaggatgtcaccgcaaaccccaagctcctggcgttactcgaccac
aagtacgtggtgaacctgacggagccggcctacagttacttgttacgctacctgcagagc
gaagacaacagtaccctctgcagggccctcagcacccacatccaggtagaggtcacctcc
tcaccacgcaccgactaccagctgtacgggacgacaggtgcgggagctaccggggccacc
accacggcccccaactctacctcctcgtggtcgggtgcggatggccctgagcgaggagag
gcggcaggggtggaggtccccacagggatcccgcagagcgaggcggccctggaggcactg
caggactgcattaagaaggtgcgtgaggggccgccgtcactcaccaccgtgtgcttctat
gccttccagcacacggagcagctactgaacacggcagtggtgtcggctgacagcaagctg
ctggccgccgggttcgacagctcggccgtcaagctatggagtcttagggccaggaaactg
aaggccaggccacaccggaccgacgtgtcacacatccgcctagcatgtgacgtgctggaa
gaggaggcagatgaagaggacggctcgggcagcgagatcaagaccctgcgtggccacagc
ggtccggtgttccgcacggccttcctgacagacagctcgggcctgctgtcctgctcggag
gacacgtccattcgctactgggacctgggcagcttcaccaacacggccctctaccagggt
cacgcctaccccgtctgggacgtggacgtcagcccctgcagcctctactttgccagcgcc
tcccacgaccgcaccgcccgcctctggaccttctccaggacctaccctctgaggctctac
gccggccacctagcggacgtggactgcgtcaagttccaccccaactcaaactacctggcc
acaggctcaacggataaaaccgtccgcctctggagtacccagcagggggcgtcagtgcgc
ctgttcacaggccaccgcggccccgtgttgtccgtagccttcgcgcccaatgggaagtac
ctggcatcggcgggcgaggaccaacgggtgaagctgtgggacctggcctcaggggctctg
gtcaaggacctgaggggccacacggacagtgtcaccagcctgtcgttcagccccgacagc
agcctggtggcctcctcttccatggacaactcagtcagagtgtgggacatccgaaactcc
cacagcacgacccacgcggatggctcgtccagcgagctggtggggctctacacaggcaac
accagcaacgtgctcaacgtccagttcatggcctgtaacttgctcctggtgacgggaaca
gcgcaggagaaacatggacagtag

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