Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139370464
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Entry
139370464 CDS
T10872
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
139370464
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ocla03041
]
139370464
03009 Ribosome biogenesis [BR:
ocla03009
]
139370464
Enzymes [BR:
ocla01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
139370464
Spliceosome [BR:
ocla03041
]
Complex A
U1 snRNP components
U1 related factors
139370464
Complex B
139370464
Ribosome biogenesis [BR:
ocla03009
]
Eukaryotic type
Pre-60S particles
Helicases
139370464
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
ERCC3_RAD25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
139370464
NCBI-ProteinID:
XP_070966060
LinkDB
All DBs
Position
17:complement(19708408..19715686)
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AA seq
630 aa
AA seq
DB search
MPGFSDRDRGRDRGYGAAPRFGGGGGGSRGGPPQGKFGNPGERLRKKHWNMDELPKFEKN
FYQEHPDVTRRPPQEVENYLRSKDVTVKGRDCPKPMMKFHEANFPNYVMDVIAKQGWAEP
TPIQAQGWPLALSGKDMVGIAQTGSGKTLAYLLPAIVHIQHQPFLEHGDGPICLVLAPTR
ELAQQVQQVAAEYGRASRLKSVCVYGGAPKGPQIRDLERGVEICIATPGRLIDFLEAGKT
NLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKQY
VQINVGALQLSANHNILQIVDVCNDGEKDDKLLRLLEEIMSEKENKTIIFTETKRRCDEL
TRRMRRDGWPAMGIHGDKSQQERDWVLNEFKYGKAPILIATDVASRGLDVEDVKFVINYD
YPNSSEDYIHRIGRTARSQKTGTAYTFFTPNNMKQASDLIAVLREANQAINPKLLQMAEA
RGGRGGGGRGGFRDDRRDRYSGGRSYGGGGGGSYRDKDSDRGFGGGPKSAFGTKTQNGVG
YGGSTYDKGASSGGSYGNSYGSNGQASFGATNQVGAFGGQNFQAPPQFGAAQAAAPNGMG
RPPFPFNPQAQQSQQPPPMVPYSMPPPFPQ
NT seq
1893 nt
NT seq
+upstream
nt +downstream
nt
atgcctggattttccgacagagatcgtggcagagacagggggtatggagctgcacctcgt
tttggaggcggcggtggtggcagtaggggtggaccccctcaggggaaatttggcaaccca
ggtgaaaggctgcgcaaaaaacactggaacatggatgagctcccaaagttcgagaagaac
ttctaccaggagcatccggatgtgacccgcagaccacctcaagaggtggagaactacctg
cgaagtaaagacgtaacagtgaaaggcagagactgccccaagcccatgatgaagtttcac
gaggccaattttccaaattatgtgatggatgtgattgccaaacaaggatgggctgagcca
actcctatccaggctcagggctggcctctggccctcagtgggaaagacatggtgggcatc
gcccagacaggctccggtaaaacccttgcttatctgctgcctgcaatcgtgcacattcaa
caccagccattcttggagcatggagacggacctatatgtttggtgctggccccgacccgt
gagctggctcagcaggtgcagcaggttgccgctgagtacggcagggcctcccgcctgaag
tcagtctgcgtctatggtggagcccccaaaggaccccagattcgggaccttgagagaggc
gttgagatctgtattgccaccccagggcgtctcatagacttcctggaggctgggaagacc
aaccttcgcaggtgtacttaccttgtgctggacgaggctgaccgtatgctggacatgggc
ttcgagccccaaatccgcaaaattgtagaccaaattcgaccggatcgtcagaccctcatg
tggagtgccacctggcccaaggaggtgcgccagctggctgaggacttcctgaagcagtac
gtccaaatcaacgtgggcgcgctgcagctcagcgctaaccacaacatcctgcagatagtg
gacgtgtgcaacgacggcgagaaggatgacaaactcctccggctgctggaagagatcatg
agcgagaaggagaacaagacaatcatctttaccgagaccaagagacgctgcgatgagctc
accaggaggatgagacgagatggctggccagcaatgggtatccatggagacaaaagccag
caggagagggactgggttctcaatgagttcaaatacggcaaggcccccatcctcatcgcc
accgatgtggcctcccgcggtctagatgtggaggatgtgaaatttgtcataaattatgac
tatcctaactcctctgaggactatatccaccgcattggacgcacggcccgcagtcaaaaa
acaggcaccgcctacaccttcttcacccccaacaacatgaaacaggccagtgacctcata
gctgtgctccgcgaagctaaccaggctatcaaccccaagctcctccagatggcagaggcc
agaggaggtcgtggcggggggggaagaggtggctttagggatgaccggcgagataggtat
tctggggggaggagttacggtggtggtggtggtggtagttacagggacaaggatagcgac
agggggttcggtgggggaccaaagagtgccttcggcacaaaaacccaaaacggagtgggc
tacgggggtagcacctatgacaagggcgctagctctggcggtagctacggcaacagctac
ggcagcaacggacaggctagctttggcgccaccaaccaggtgggtgcgttcggaggccag
aacttccaggcccctccacagtttggagctgcgcaggcggctgccccaaacggcatgggt
cgcccaccattcccctttaacccacaggcacagcagtctcaacaacccccacccatggta
ccctactctatgcctccccctttcccacagtaa
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