Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139370494
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Entry
139370494 CDS
T10872
Name
(RefSeq) probable helicase with zinc finger domain isoform X1
KO
K25168
helicase with zinc finger domain [EC:5.6.2.-]
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
Messenger RNA biogenesis [BR:
ocla03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
Other 5'-3' decay factors
139370494
3'-5' decay
Other 3'-5' decay factors
139370494
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GFIT
Other DBs
NCBI-GeneID:
139370494
NCBI-ProteinID:
XP_070966110
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Position
17:complement(20843253..20905879)
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AA seq
2000 aa
AA seq
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MADRRAEKSCEEASGSLARREYEAAVSHCTDALLALGPPAPPSPGPPASNAPNDTVTPLR
SRALLYRIAALLQLKNYDQADEDCKHVLAEELAKGDGSFQASLRCMLLDGSLHEVAGLLS
KSLFGEPLNGIVTKDLTRLKMLLSEIEAIRSEMATEYTDDNEEEVRDGWQFRPPPRGVTS
SEEYTLCKRFLEQGLCRYGAQCTSAHSREELMEWQKRYASRLIRLKQQQESKHFTENYME
ALIEKWMNSLSPEKVLSDYLDGVNVEHSSNLSVTVTTKKSAHSWTFSLFCKPVRKLYRIA
LLYDAHRPHFSITGVSVGDAGAQRLQAAAEGCQEWTAGEEALAADNGMDHCVYTVVVGFS
TEIFGTFRQTIVFDFGSEPVLMQRIMVDAASIEDLEHLMQARQQLLMTAKRWDPSCKTIV
EFSPNETVDLDRSLLARYQIPLSADQLFTQSVLDKTLTRDNYQARLHDLLYIEEIAQYKE
VSKFNIKVNLQLVTSFMLTGISGGAKYAQNGQLFARFKLTETLSEDTLAGRLVMTKVNSV
LLLPLARQEWCSQPPGVKERVYEACIEEKTKDYIFLRICKDCCEELGLIPDRELQVELQF
QLNRLPLCEMHYALDRIKDNGILFPDTSLTPTIPWSPNRQWDEQLDPRLNAKQKEAILAI
TTPLTIPLPPVLIIGPYGTGKTFTLAQAVKHILKQDDSRVLICTHSNSAADLYIKDYLHP
YVEAGNAHARPLRVYFRNRWVKTVHPLVQQYCLISNTQYTFQMPEREDILRHRVVVVTLS
TSQYLCQLDLEPGLFSHILLDEAAQAMECETIMPFALASKSTRIVLAGDHMQLSPFVYSE
FSRERNLHVSLLDRLYEHYPAEFPCRILLCENYRSHEAIISYTSELFYDGKLMASGKQPS
HKDFYPLTFFTARGEDVQEKNSTAYYNNAEVFEIVERVEEMRKKWPVAWGKLDEGSIGVV
SPYADQVFRIRAELRKKRMHEVSVERVLNVQGKQFRVLFLSTVRTRHTCKHKQTAIKRKE
QLVEDSTEDLDYGFLSNYKLLNTAITRAQSLVAVVGDPIALCSVGRCRKFWEKFISICHE
NASLHGITFEQIKAQLEALELKKTYVLNPLAPEFIPRALRPQPAQHPHHHQHHHQHPHPQ
GHTAIKQPQQQQPQQSPPKGKGQHANHTEHFPPEGFVQPNPAVLMGNPIRAFTPPLGGTP
GGMGKSPSPVQRIDPHTGASILYVPAVYGGNMVMSMPLPSVPIQLPWPGYQNRFAMDPRI
MSHQAAMAYNLNLLQAQNRGSPIPYGGVTHPSPLGVGQQTSPDKELQTDSVRNGKMDGCA
KSEQSRLQTPERKTSEMKDKQGECDPGSGRGLDSQTDGLGFPNAMLHRKDNSSQRPLNYH
LAPPNPAFAPHPVGRAFPPQYPGVSRLPFRVPTQHPGGGPAMGQPNQHHSAQLSPAYASG
NHNPSFFGGAMASHRGVPETEEEGPEEIGNSIRSQMGHQVGHHPALSQPSRVNSFGEENQ
EGGLGDGMDSLTLEALSQQARLGQWGEPGPFLQGGVAFPLPQQLAHLAQPGLARFPPQLL
ARANWRMSAGMEDEAGGPPFTRFPGLLREMPPQDQPDHRDPVEMQPPPQSRLLQYRQVQS
RSPGDPSSPSSVTSNHTGPFPPGPYPGRDPTSHELELLNNPGLHQHPGNQLYNPNAYPHQ
LGHSITPPPQVKYLLQEAQWPHGGAGVAQNHMLAQGQGFPYGLPVMAHPSRQEQVHLMQL
HHQQQQHQQQQQQQGQGPGQEPYHPLSPRTTGATALHNVEEYEPRGPGRPLYQRRISSSY
PDEGSPANAAALAQQQPQPCPPDPQEHPHTHQHPHPHQHPHAPYGYPPPELWPGNGGGPG
PFQNIPCNGASTLIQHRDLLVASKALRQAAEEQMKAEAAAAVAAAQPPAHSLQHLGQFPP
LMPNSKPQQQQAAPEPGQGPGGPQNPGKPPTMSYASALRAPPKPRARPEQVKKHSDPLSL
LQELSIGSSNGSNGYYSYFK
NT seq
6003 nt
NT seq
+upstream
nt +downstream
nt
atggcagacaggagagcggagaagtcatgtgaagaagccagcggatcgttagccaggcgg
gagtacgaggcggcagtgagccactgcacagatgcgctgctggccctcggccccccggcc
cctcccagccctggaccccccgcatccaacgcccccaacgacacggttacccccctccgc
agtcgcgccctgctctacaggatagccgccctgctacagctgaaaaactatgatcaagca
gatgaagactgcaaacatgttctggctgaggagctggccaagggagacgggtcgtttcag
gccagcctgcgatgcatgctgttggacggcagcctgcacgaagtggccggcctcctctcc
aagtccctgtttggggagcctctgaacggcatcgtcacaaaggacttaactagattaaaa
atgcttctctcagaaattgaagccattcgtagcgagatggccacagaatatacagacgac
aacgaggaagaagtacgggatggatggcagtttcgccccccgcctagaggagttaccagc
agtgaggagtacacgctgtgtaaaaggttcctggagcagggcctgtgtcgctacggtgcc
cagtgcacgtcggcccactcccgggaggagctgatggagtggcagaagcgctacgcctcg
cgcctcatccgcctcaagcagcagcaggagagcaagcacttcaccgagaactacatggag
gcgctcatcgagaagtggatgaactctctctcccctgagaaagtgctgagtgactatttg
gacggcgtcaacgtggaacacagctccaacctctccgtaacggtcaccaccaagaaatca
gctcactcctggaccttctccctgttctgcaagcctgtgaggaagctgtaccgcatcgcc
ctgctctacgacgcccatcgaccccacttctccatcacgggcgtgtcggttggcgatgcc
ggtgcccagcggctgcaggcggcggccgagggctgccaggagtggacagcgggcgaggag
gcgctggcggccgacaacggcatggaccactgcgtctacacggtggtggtgggcttcagc
accgagatcttcggcaccttccgccagaccatcgtcttcgactttggctcggagcccgtg
ctgatgcagcgcatcatggtggacgccgcctccatagaagacctggagcacctaatgcaa
gccaggcagcagctcctgatgacggccaagcgctgggacccgtcctgcaagaccatcgtg
gagttcagccccaacgagacggtggacctggaccgcagcctgctggcccgctaccagatc
cccctgtcggccgaccagctcttcacccagtcggtgctggacaagaccctgacccgggac
aactaccaggcccgcctgcacgacctgctctacatcgaggagatcgcccagtacaaagaa
gtcagcaagttcaacatcaaagtcaacctccagctggtcaccagcttcatgctgacgggc
atctcgggtggcgccaagtacgcccagaacgggcagctcttcgcccgcttcaagctgacg
gagacgctgtcggaggacacgctggcgggccgccttgtcatgaccaaggtgaactctgtc
ttgctgctgcccctggcccgccaggagtggtgcagccagcccccgggggtcaaggagcgg
gtctatgaggcctgcatcgaagagaagaccaaggactacatcttcctgcggatatgcaag
gactgctgcgaggagctgggcttgatacctgatagggaactgcaggtggagctgcagttt
cagttgaaccgcctgcccctgtgtgagatgcactatgctctggaccgcatcaaagacaac
ggcatcctgttcccagacaccagccttacccccaccatcccctggagccccaacaggcag
tgggacgagcagctggacccgcgtctcaacgccaagcagaaggaggccatcctggccatc
accacgcctctcaccatccccctgccccctgtgctcatcatcgggccctacggcacgggc
aagaccttcaccctggcacaggccgtcaagcacatcctcaagcaggacgacagcagggtc
ctcatttgcacccattccaacagtgcagctgacctgtacataaaggactaccttcatcca
tacgtagaagcgggcaacgcgcacgcaagacctctcagggtatacttcaggaaccgctgg
gtgaagactgtccacccgttggtgcagcagtactgtctgatctctaacacacagtacact
ttccagatgcccgagagagaggacatcctccggcaccgcgtggtggtggtcaccctcagc
acctcccagtacctctgccagctggacctggagccagggctcttctctcacatcctattg
gacgaggcggcccaggccatggagtgtgagaccatcatgcctttcgcgctggccagcaaa
agcacccgcatcgtgctggctggagaccacatgcagctcagtccgtttgtgtacagcgag
ttttctcgagagcggaacctgcatgtgtcgctgttggaccggctgtacgagcactaccca
gccgagttcccctgccgcatcctgctctgtgaaaactaccgctcccacgaagctatcatc
agctacacgtcagaactgttctacgacgggaagctgatggccagcgggaagcagccgtct
cacaaggacttctacccgctgaccttcttcacggcgcgcggcgaggacgtccaggagaag
aacagcacggcctactacaacaacgcagaggtgtttgagatcgtggagcgggtggaggag
atgcgtaagaagtggccggtggcgtggggcaagctggacgagggcagcatcggcgtggtg
tcgccctacgccgaccaggtattccgcatccgcgccgagctccgaaagaagaggatgcac
gaggtcagcgtggagagggtgctcaacgtccaaggtaagcagttccgggtgctcttcctg
agcactgtgcgcacacggcacacctgcaagcacaaacagacggccatcaaacggaaggag
cagctggtggaggactcgacggaggacctggactacggcttcctgtccaactacaagctg
ctcaacacggctatcactcgcgcccagtccctggtggccgtggtgggagaccccatagcg
ctctgttcggtgggccgctgcagaaagttctgggagaagttcatctccatctgccacgag
aacgccagcctgcacggcatcacctttgagcagatcaaggcccagctggaggcccttgag
ctcaagaagacctacgtgctcaacccgctggcgcccgagttcatcccccgcgccctgcgg
ccccagccggcccagcacccccatcatcaccaacaccatcaccaacacccacacccccag
ggacacacggccatcaagcagccccagcagcagcaaccgcagcagtctcccccgaagggg
aaaggtcaacatgcgaaccacacggagcacttcccacctgaaggatttgttcaacccaac
cccgcggtgttgatgggcaaccctatccgggcgttcacgccgcccttagggggcacacct
ggcggcatgggcaagtcccccagtcccgtgcagaggatagacccccacacgggcgccagc
atcctctacgtgcccgccgtttacggaggaaacatggtcatgtccatgccactgccctct
gtccccatccagttgccgtggcctggctaccagaaccgctttgccatggacccacgcatc
atgagccaccaggcggccatggcctacaacctgaacctgctgcaggcccagaaccggggc
tcgcccatcccctacggcggagtcacacacccctcccccttgggcgtgggccagcagacc
agtcccgacaaggagcttcagactgattctgtcagaaacggtaaaatggacgggtgtgca
aagtccgagcagagtcggctgcagacaccagagaggaagacctcggagatgaaggacaaa
cagggagagtgtgatccgggcagtggccggggtctggactctcagacggacggactgggc
ttccccaatgccatgctccaccgcaaggacaactcaagccaaagacccctcaattaccac
ctggcgccccccaacccggcctttgccccccatcccgtgggtcgggccttccccccacag
taccccggcgtgtccaggctcccctttagggtgccgacccagcacccaggtgggggcccg
gccatgggccagcctaaccagcatcactcggcccagctatccccagcctacgccagcggc
aaccacaacccctccttctttggtggggccatggcctcccacaggggtgtgccggagact
gaggaggaggggccggaggagattgggaattccatcaggtcccagatgggccaccaggtg
gggcaccacccggccctgtcgcagcccagccgagttaacagcttcggagaggaaaaccag
gaaggaggcctgggagatgggatggactccctaactctggaggccctgagccagcaggcg
cggctgggccagtggggtgagcccgggcccttcctccagggcggtgtggccttccctctg
ccccagcagctggcccatctggcccagcccggcctagcccgcttcccccctcagctgctg
gcacgggccaactggagaatgagcgccggcatggaggacgaggctggcggaccgcctttc
actaggttcccaggcctcctaagagagatgcccccccaggatcagcccgatcacagggac
ccggttgagatgcagccccctccccagtcccgcctgctccagtatcgccaggtccagtcc
cgctccccgggagacccctcctccccctcgtctgtaacttccaaccacaccggccccttc
ccccctggcccctatcccggccgagaccccaccagccacgagctggagctcctcaataac
ccgggtctccatcagcacccggggaaccagctctacaaccccaacgcctacccccaccag
ctgggccactccattaccccgcccccgcaggtcaagtacctcctccaggaggcccagtgg
cctcacggcggagctggcgtggcccagaaccacatgctggcccagggccagggcttcccc
tatgggctgcccgtcatggcccaccccagtagacaggagcaggtccacctcatgcagctc
caccaccagcagcagcagcaccaacagcagcagcagcagcagggtcaaggcccaggccag
gagccctaccaccctctctcccccagaacaacaggtgccaccgcccttcacaatgtagaa
gagtatgaacccaggggtcccgggcggcccctttaccagcggcggatctcctccagctac
ccagacgagggatcccccgccaacgccgccgccttggcccagcagcagccacagccctgc
ccgccagacccccaggagcacccccacacacaccaacaccctcacccccaccaacacccc
cacgccccctacggctaccccccgcccgagctgtggcccggcaacggtggcggccccggc
ccgttccagaacattccatgcaacggagccagcacactcattcaacaccgggacctccta
gtagcttccaaggccctgcggcaggcagcagaggagcagatgaaggctgaagcggcagca
gcagtagctgcggcccagcctcccgcccactccctccagcacctcggacaattcccccct
ctcatgcccaacagcaagccacagcagcagcaggccgccccagagcccggccaaggcccc
gggggcccccaaaaccctggcaaaccccccaccatgtcctacgccagtgccctccgcgcc
ccacccaaacccagagctcgtcccgaacaggtcaaaaagcacagcgacccactttccctt
ctccaagagctgagcataggaagttcaaatggtagcaacggatactattcctattttaaa
tga
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