Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139370732
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Entry
139370732 CDS
T10872
Name
(RefSeq) integrin alpha-5-like
KO
K06484
integrin alpha 5
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03266
Virion - Herpesvirus
ocla04145
Phagosome
ocla04510
Focal adhesion
ocla04512
ECM-receptor interaction
ocla04810
Regulation of actin cytoskeleton
ocla04820
Cytoskeleton in muscle cells
ocla05100
Bacterial invasion of epithelial cells
ocla05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03266 Virion - Herpesvirus
139370732
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
139370732
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
139370732
09144 Cellular community - eukaryotes
04510 Focal adhesion
139370732
09142 Cell motility
04820 Cytoskeleton in muscle cells
139370732
04810 Regulation of actin cytoskeleton
139370732
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
139370732
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
139370732
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ocla04147
]
139370732
04515 Cell adhesion molecules [BR:
ocla04515
]
139370732
04090 CD molecules [BR:
ocla04090
]
139370732
Exosome [BR:
ocla04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
139370732
Cell adhesion molecules [BR:
ocla04515
]
Integrins
Integrin alpha subunits
139370732
CD molecules [BR:
ocla04090
]
Proteins
139370732
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Integrin_A_Ig_3
Integrin_A_Ig_2
Integrin_A_Ig_1
FG-GAP
FG-GAP_3
ITGAX-like_Ig_3
Integrin_alpha
DUF11
Motif
Other DBs
NCBI-GeneID:
139370732
NCBI-ProteinID:
XP_070966497
LinkDB
All DBs
Position
17:35258375..35314362
Genome browser
AA seq
1062 aa
AA seq
DB search
MGTGRQFATISVNSTPRNPGYCALFVVLTLVFIQQCATFNLETENRVVYTGPKDSFFGYS
VDVFYNNSSSVSILIGAPKANTSQPNVNEGGSVYSCPWSQGQSNCSVVHFDNEGDRRFHV
NDVDVQVEFKSHQWFGATVRSHGNTVLACAPRYYWRTEHDAPFSDVTGTCYLSVDNLKTF
VEYAPCRTERHGPAGQGYCQGGFSADFTKDGKIVLGGPGSFYWQGQLILATTKEIVKAYY
PSYFLLSVAGQIQTHQVQGSYDDSYLGYSVAGGEFSGDNIEDFVTGVPKGLMLYGLVSIL
NGTDLKSMLNLTGEQMGSYFGYAVAVTDINNDGMEDLVVGAPMFMQRGSDGLRWEEVGRV
YVYLQRRPLLFEPRLPHLGGTQAFGRFGSSLAPLGDLNQDGFNDIAIGCPFGGDDQQGLV
LIYNGHASGLMDMPTQTLAGQWASGTFPASFGYALRGNKDLDHNGYPDLIVGAFGVDKAV
LYRARPIVNASASLVLQPTMINPEEKSCTVSNGNETISVSCVNLSFCLSANGKHLPADLG
FVVEVQLDHLKQTRKESSVRRTLFLDSQQPSLRKTITMANGGRTCHDTRIYLRSEGEFRD
KLSPIYVTLNFSLDPLASLDLHGLRPILKYQTTHLIEQKAQIQLDCGEDNICVPDLKLAV
YGDRTEVYLGDDNSLTLTFNARNEGEGGAYEAELYMVLPPEADYSGIARNNASLTQLTCS
YEAENQTRSLVCDLGNPMKSGTSLWAGLRFTVPRLKDTYNTVQFELQIRSKNENSSQSDV
ELYNLEVAVVADVILQGVSRPDKLLFPPPNWRMSHSLQEEQDIGSEIQHVYELVNNGPSM
ISQSVLELRCPLRAQGHDLLYPVEVITQGPLNCSSNHTLNALKLKLQPPSTEQPPSSQTV
SPEHHIQRREVYRDPLAKQSNLSCSTVECWRLHCHVGLLERGNSVILTVRSRIWAETFIE
RAYKQYVLECSAQYRVKNMPYAIAPKLKPSGSTKVLTPVMWNKPESQYIVPLWIIILAIL
AGLLLLALLIYVLYKMGFFKRSNPYGTAMEKAQLKPQASSEA
NT seq
3189 nt
NT seq
+upstream
nt +downstream
nt
atgggcactggacggcaatttgcaacaatttcagtaaactcaaccccgcgaaatccaggt
tattgcgccctgttcgttgtacttacattggtttttatccagcagtgcgcaacgtttaac
ttggaaacggaaaaccgcgtcgtctacactggacctaaggacagttttttcggttattcg
gtggatgttttctacaataattcgtctagtgtcagcattctgattggtgctcccaaagct
aacaccagccaaccgaatgtcaacgaaggtggatctgtgtactcatgtccctggagccag
ggccaatcgaattgcagtgtcgtccactttgacaatgaaggagatcgccgtttccatgtc
aacgacgtagacgtccaggtggagttcaagtcccatcagtggtttggggcgacagtgcgt
tcccatggcaacactgtcctggcttgtgccccgaggtattactggagaacggaacacgac
gcccccttctctgacgtcacaggaacttgctacctctccgtggacaacctcaagacattt
gtggagtacgccccctgtcgcacagagagacatggtcctgccggacagggctactgtcag
ggcgggttcagtgctgacttcaccaaggatgggaagattgttcttggaggaccaggaagc
ttttactggcaaggtcagctgatcttagcaaccacaaaggaaatagtcaaggcctactac
ccttcctacttcctgctctctgttgctgggcagatccagacccatcaggtgcaggggagc
tatgatgacagttacctgggttactctgtggcaggcggggagttcagtggagataatatt
gaagatttcgtcacgggagtccccaagggactcatgttgtatggtttagtgtccatactc
aatggaacagacctgaaatccatgctgaacctcaccggagaacagatggggtcctatttc
ggctacgcagtggcagtcacggacatcaacaacgacgggatggaagaccttgtggtggga
gctcccatgttcatgcagaggggttccgacggactgcgttgggaggaggtgggccgtgtc
tatgtgtacctgcagcggcgacccttgctgtttgaacccaggctgccccacctggggggg
acccaggccttcgggaggtttggcagctcgctggccccactgggagacctcaaccaggat
ggcttcaatgatattgccatcggctgtccctttggaggagacgaccaacagggattggtc
ctcatctataatggacatgccagtggactgatggacatgcccactcagactctagctggc
caatgggcctctggcaccttccccgccagttttggctacgccctccgcggaaataaagat
ctggatcataatggctacccagatctcatcgtaggtgcttttggggttgacaaggctgtt
ctgtacagggcgcggcctattgtcaatgccagtgcctctcttgtgctgcaacctaccatg
atcaatccagaggagaagagttgtacggtgtccaatgggaatgagacaatctctgtgtcc
tgtgtcaacctcagtttctgcctctcggccaatgggaagcacctccctgctgatctaggt
tttgtggtggaggtacagttggaccatctgaagcagacccggaaggagtcgtcagtgagg
agaactctgttcctggatagccaacagcccagcctacggaagaccatcaccatggccaat
ggaggacgaacgtgtcacgacacccgcatctacctgcgaagtgaaggggagtttagggat
aaactttcccccatttacgtcacactcaactttagcctggaccctctcgcttcgctggat
ctccatggcctgagacccattctaaaataccagacaacacaccttatagagcagaaggcc
cagattcagctggactgtggtgaggacaacatctgtgtccctgacctcaaactggctgtt
tatggcgataggacggaggtgtatctgggtgacgataactccctgaccctgactttcaat
gccaggaacgagggagagggcggggcctacgaggcagagctttacatggtgcttccccca
gaggctgactacagtggtatagcccgcaacaatgcgagtctgactcagctaacctgtagc
tacgaggcagagaatcagacccgctctctggtctgtgacctgggcaaccctatgaagtct
ggcacaagtttgtgggcaggcctccgcttcactgtgccccgactgaaggacacttacaat
acggtgcagtttgagctccagatacgcagtaaaaatgagaatagctcccagagcgatgtt
gagctctataatcttgaggtggctgtggtagctgatgttatcctacagggcgtttctcgt
ccggacaagctcctcttccctcccccaaactggaggatgagccacagcctccaagaggag
caggacattgggtctgagatccagcatgtctacgagttggtgaacaatgggcccagtatg
atcagtcagtcggtgctggagctgcgatgccctctgagagctcagggtcacgatcttctg
taccctgtggaggtcatcactcagggaccactcaactgcagctccaaccacaccctcaat
gcactgaaactcaagctccagcctccttcaacagaacagcctccctcctcacagacggtc
agccctgaacaccacatccagaggagagaggtctacagggatcctctggccaaacaaagc
aacttgtcatgctctacggtggagtgctggaggctgcactgccatgtagggttactggag
agaggaaacagtgtcattctgaccgtccgctcacgcatctgggctgagaccttcatcgag
agggcgtacaagcagtatgtgctggagtgttctgcccagtacagagtcaagaacatgccc
tatgccatcgctcccaaactcaaacccagtggatccacaaaggtcctgactccagtgatg
tggaacaagccggagagccagtacattgtacccctgtggattatcattctggccatactg
gctggactgctgctgctcgccctgctcatatatgtactatacaagatgggcttcttcaaa
agatccaatccctatggtacagccatggagaaagctcaactcaaaccccaggcttcttct
gaggcctaa
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