Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139370815
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Entry
139370815 CDS
T10872
Name
(RefSeq) dihydropyridine-sensitive L-type skeletal muscle calcium channel subunit alpha-1-like
KO
K04857
voltage-dependent calcium channel L type alpha-1S
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04010
MAPK signaling pathway
ocla04020
Calcium signaling pathway
ocla04260
Cardiac muscle contraction
ocla04261
Adrenergic signaling in cardiomyocytes
ocla04270
Vascular smooth muscle contraction
ocla04912
GnRH signaling pathway
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
139370815
04020 Calcium signaling pathway
139370815
09150 Organismal Systems
09152 Endocrine system
04912 GnRH signaling pathway
139370815
09153 Circulatory system
04260 Cardiac muscle contraction
139370815
04261 Adrenergic signaling in cardiomyocytes
139370815
04270 Vascular smooth muscle contraction
139370815
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ocla04040
]
139370815
Ion channels [BR:
ocla04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
139370815
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
GPHH
Ca_chan_IQ
PKD_channel
CAC1F_C
Motif
Other DBs
NCBI-GeneID:
139370815
NCBI-ProteinID:
XP_070966698
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Position
17:40673722..40706550
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AA seq
1832 aa
AA seq
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MAESGGEPNLQSYIMDEETLKRKQKEKLKKLLATGGNPRPARSLFFLTLKNPFRKAAINI
VEWKPFEIIILLTIFANCVALAVFLPMPEEDSNNTNSNLESLEYIFLIVFSIECFLKIIA
YGFLFHENAYLRNCWNILDFVCVSVGLFAVIGDFITYISGVEAQPGDKGGGFDMKALRAF
RVLRPLRLVSGVPSLQVVMNSILKSMLPLFHISLLVFFMVTIYAIVGLELFKCKMHKTCY
YTGTNIIATVENEKASPCAQAGNGRRCTINGTECRAGWAGPNNGITHFDNLGFAMLTVYQ
CITTQGWTDVLYWVNDAIGMEWPWMYFLTLILVGSFFVLNLVLGVLSGEFTKEREKGKAR
GEYTEMRETQQLDEDLKGYMEWITQAEVMDADGEGQGLLTLEDGESEAGSLKDMDTMQKI
MYYYKLARKWNIFFRRKCLVYVKSRVFYWWVILLVFLNTLAIATEHHKQSQQLTEWQDTA
NKVLLSLFAIEMFMKMYALGLQQYFMSLFNRFDCFVVSTGILELVLVGMDVMTVMGISVL
RCIRLLRLLKVTKYWTSLSNLVVSLLNSTPSIACLLLLLFLFIVIFSLLGMQVFGGKFNF
PNAPKPRSTFDSFPQALISVFQILTGEDWNSVMYDGIMAHGGPTMPGILVSIYFIILFVC
GNYILLNVFLAIAVDNLAEAESLTMAQKEKSEEKKRKKLLRANMPDKATEEKALLAKKLA
AERAKIEGIPTTAKLRVDEFESNVNEIKDPFPPADFPGDDEEEEPDIPDTPRPRPMADLQ
LKEEVVPIPEASSFYIFSSDNKIRKLCHRIINATAFTNIILLFILLSSISLAAEDPIDPM
SFRNQVLASADVVFTSVFTVEVVLKMTVYGAIMHPGSFCRNSFNILDLIVVSVSLLSMLM
ESSAISVVKILRVLRVLRPLRAINRAKGLKHVVQCVFVAIKTIGNIVLVTMLLDFMFACI
GVQLFKGKFYACTDPDKMTEEECKGNYIRYQEGAIHPMTIHKREWINAELNFDNILEGML
ALFTVSTFEGWPKLLYKAIDSNMEDMGPVYNNRIAISIFFIVYLILIAFFMMNIFVGFVI
VTFQEQGEQEYKNCELDKNQRACVEYALKARPLRCYIPKNPYQYNVWYIVTSCYFEYLMF
LLIMLNTMCLGMQHCNQSTHVTDLSDMLNVIFTVLFTVEMVLKLMAFKAKGYFGDPWNVF
DFVIVIGSVVDVILSEVDAALASTGGLYCLHGCAEVNPMQAIADSENARVSITFFRLFRV
MRLVKLLNRSEGIRNLLWTFIKSLQALPYVALLILMLFFIYAVVGMQIFGKIALIDGTYI
NRNNNFQTFPHAVLLLFRCATGEAWQEVMLACLYGKRCDPKSDYLPGEEMTCGASFAIIY
FMSFYMLCAFLIINLFVAVIMDNFDYLTRDWSILGPHHLDEFRKIWAEYDPEATGRIKHL
DVVTLLRRIQPPLGFGKFCPHRVACKRLVSMNMPLNSDGTVTFNATLFALVRTALKIKTE
GNFEKANEELRAIIKKIWKRTSMKLLDQVIPPIGDDEVTVGKFYATFLIQDYFRKLKKRQ
EEYYGFRPTKKNAKNEIQAGLRSIEEEEAPELQRAISGDLMNEEEMDRAMEDAAEEGIFR
RAGGLFGNHVDSFTMEEGTRDPNATQVTSQRPLQMSRSDDGEATSSPAYHANEDFFPSTP
NKTNNNNVNNSAGESFSCGTYDRVQVYTISTSRSPPDRDWQLQTVAGARQDAEPHREPLS
LQQAQGPDSAFDTLIQEVLINGGLESLARDPRFVSVTKREMAEALNFDPMDMESSATELM
NGRRGSVVTPPIRPPRRSQRKANQSTTPRDVV
NT seq
5499 nt
NT seq
+upstream
nt +downstream
nt
atggcggagagtggcggcgagcctaacctgcagtcctacattatggacgaggaaactctg
aagaggaagcagaaggagaagctgaagaagctcctggccacggggggaaaccctcggccc
gcacgctccctctttttcctcacattgaagaaccccttccgcaaggctgccatcaacatt
gtggaatggaaaccgtttgagatcatcatcctgctgaccatctttgccaactgtgtggcc
ctggctgtgttcctgcccatgcctgaggaggacagcaataacaccaacagcaacctggaa
agtctggagtacatcttcctcatcgtcttctccatagagtgctttctaaaaataatagcc
tatggatttctatttcacgagaatgcgtatctgcggaactgttggaacatactggatttt
gtctgtgtatctgtggggctgtttgcagtcatcggggacttcatcacctatatcagtggt
gtggaggctcaaccaggggacaagggaggaggcttcgacatgaaggccctcagggcattc
agggtgctccggcccctcaggctggtctctggagtccccagcctgcaggtggtgatgaac
tccatcctgaaatccatgctacctctgttccacatctccctgctggtcttcttcatggtc
accatctacgccatcgtgggactggagctgttcaagtgcaagatgcataaaacctgctac
tacacaggcacaaatatcatagccacagtggagaatgagaaggcatctccatgtgcccag
gccggtaatggtcggcgctgcaccatcaacgggacagagtgtagggcgggatgggccgga
cccaacaacggcatcacacactttgacaacctgggcttcgctatgctcactgtctaccag
tgcatcactacccagggctggaccgacgtgctctactgggtgaatgatgccatcggtatg
gagtggccgtggatgtactttctgacactcatcttggttggctccttctttgtactcaat
ctggttctgggcgtgctcagtggtgaattcactaaggagcgagagaagggtaaggcgcgt
ggagagtacacagagatgagggagacccagcagctggatgaggatctgaagggctacatg
gagtggatcacacaggccgaagtcatggacgccgacggggaaggacagggcctgctaacg
ctggaggatggagaatccgaggcagggagcctaaaggacatggacaccatgcaaaaaatc
atgtactactacaagctggctcgtaaatggaacattttcttccggcgtaagtgtcttgtg
tatgtgaagtcccgtgtgttctactggtgggtgatccttctggtgttcctgaacacgctg
gccatcgctactgaacaccacaagcagtcccagcaactcaccgagtggcaagacactgcc
aacaaggtgctgctgtctctgttcgccattgagatgtttatgaagatgtacgccctgggt
ctccagcaatacttcatgtctctgttcaaccgcttcgactgcttcgtggtctccaccggc
attctggaactcgtcctggtcggcatggacgtcatgaccgtcatggggatctctgtgctg
cgctgcattcgactcctcaggctgctcaaagtaaccaagtactggacgtctctcagtaat
ctggtggtgtccctgctgaactcaaccccctccatcgcatgcctgctcctcctcctcttc
ctcttcatcgtcatcttctctctgctgggcatgcaggtgttcggggggaagttcaacttc
cccaatgcgcccaaaccccgcagcacctttgacagcttcccccaagctctcatcagtgtc
ttccagatcctgacgggggaggattggaactctgtgatgtatgatggcatcatggcgcat
ggaggtcccaccatgcccgggatcctcgtcagcatctacttcatcatcctcttcgtctgc
ggaaactacatcctgctgaatgtgttcttggccatcgccgtggacaacctggcggaggct
gagagtctgaccatggcccagaaggagaagtctgaggagaagaaacgcaagaagctgctc
agggctaacatgcctgacaaggccacagaggagaaagccctcctggccaagaagcttgca
gcggagagagccaaaatagagggcatccctaccacagccaagctgagagtggacgagttt
gagtccaacgtgaacgagatcaaggaccccttcccgcctgctgacttccctggtgatgat
gaggaggaggagcctgatatccctgacaccccgaggccacggccaatggcagacctgcag
ctgaaggaggaggtggtgcctattccagaggccagctccttctatatctttagctctgat
aacaagatccgtaagctgtgccaccgcatcatcaacgccaccgccttcaccaatatcatc
ctcctcttcatcctcctcagcagcatctccctggctgccgaggaccccatcgaccccatg
tccttcaggaaccaggtgctggcctccgctgatgtggtcttcacctcagtgttcactgtg
gaagttgtcctcaagatgaccgtatacggcgccatcatgcaccccggctccttctgccgg
aactcctttaatatcctggatctgattgtggtcagcgtatccctcctctccatgctcatg
gagtccagtgctatctctgtggtgaagatcctcagggtgttgagggtgctgaggccccta
agggccatcaacagggccaagggcctcaaacatgtggtccagtgtgtttttgtggccatc
aaaaccattggcaacatcgtgctggtcaccatgctgctagacttcatgttcgcctgcatt
ggagtccagctcttcaagggcaaattctatgcctgcacagatcctgacaaaatgacagag
gaggagtgcaagggcaactacattaggtaccaggaaggtgccatccatccgatgaccatc
cataagagagaatggatcaatgcagagctcaactttgacaacatcctcgaaggcatgctg
gctctcttcactgtgtccaccttcgagggctggccaaagttgctctacaaggccatagac
tctaacatggaggatatgggtccggtgtacaacaaccgcatcgccatctccatcttcttc
atcgtctacctcatcctcatcgctttcttcatgatgaacattttcgtgggtttcgtcatc
gttacatttcaggagcagggagagcaggagtacaagaactgcgagctggataagaaccag
cgtgcgtgtgttgagtacgccctgaaagcccggccgctgcgctgctacattcctaagaac
ccgtaccagtacaacgtgtggtacatcgtcacctcctgctactttgagtacctgatgttc
ctgctcatcatgctgaacaccatgtgtctggggatgcagcactgtaaccagtcaacccat
gtgaccgacctgtcagacatgctgaacgtgatcttcactgtgctcttcactgtggagatg
gtcctcaaactcatggccttcaaagctaagggttactttggagacccttggaacgtcttt
gactttgtcatcgtcatcggcagcgtcgttgacgtcatcctgagtgaagtcgatgcagcc
ctggcctccactggaggactatactgtctccacggctgcgctgaggtgaacccaatgcaa
gcgatagcagattctgaaaatgcccgtgtgtcaatcaccttcttccgactgttccgtgtg
atgcgtctggtgaaactgctgaaccgttctgaagggatccggaaccttctgtggaccttc
atcaagtccttacaggccctgccctacgtcgccctgctcatcctcatgctgttcttcatc
tatgctgtggttgggatgcagatatttggtaagatagcgctaatagacgggacgtacatc
aacaggaacaacaacttccagacgttcccccatgctgtgctgctgctcttcaggtgtgcg
acaggtgaggcgtggcaggaagtaatgttggcgtgtctgtatgggaagaggtgtgaccct
aagtcagactacctgcctggggaggagatgacctgtggagccagcttcgccataatctac
ttcatgagcttctacatgctctgtgccttcctgatcatcaacctgtttgtggcggtcatc
atggacaactttgactaccttacacgtgattggtccatcctgggtcctcatcacctggac
gagttcaggaagatctgggcagagtacgacccagaggccacggggcgtattaagcacctg
gacgtggtgactctgctgcgtaggatccagcctcctctgggttttggaaagttctgcccc
catagagtagcctgcaagagactggtgtccatgaacatgccactcaacagtgacggaacg
gtcacctttaacgctacgctgttcgctctggtcaggaccgcgctgaagatcaagactgaa
ggaaattttgagaaggccaatgaggagctgagggccatcatcaagaagatctggaaacgc
accagtatgaagctgctggaccaggtcatcccaccaatcggagatgatgaggtgaccgtg
gggaagttctacgccaccttcctgatccaggactacttcaggaagttgaagaagagacag
gaggagtactatggcttccgccccaccaagaagaacgccaagaatgagatacaggcaggt
ctgaggagcattgaggaggaggaggctccagagctgcagagagccatctccggagacctg
atgaacgaggaggagatggacagagccatggaggacgcagcagaggagggtatcttcagg
cgggcgggcggtctgtttgggaaccacgttgattccttcaccatggaggaaggaacccgt
gaccctaacgctacacaggtgaccagccagcggcccctgcagatgagcagatcagacgac
ggggaggctaccagttcacctgcctaccatgcaaacgaggacttcttcccctcaacgcct
aacaaaaccaacaacaacaatgtcaacaacagtgccggggagagcttttcttgtgggaca
tatgaccgggttcaggtctataccatctcaaccagcagaagtcccccagacagagactgg
cagctgcagacagtagcaggagccaggcaggatgctgagccccacagagagccgctcagc
ctccagcaggcccagggcccagacagcgccttcgatacacttatacaggaggtcttgata
aacggtgggctggagagcttggccagggaccctcgttttgtgtcggtgacgaaacgggaa
atggctgaagcgttgaactttgaccctatggacatggaaagttccgccactgagcttatg
aatggtcgcagagggagcgttgtcacgcctccaatcaggccccctcgcagatcacagaga
aaggccaaccaatcaacaacacccagggatgttgtgtag
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