Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139370817
Help
Entry
139370817 CDS
T10872
Name
(RefSeq) voltage-dependent calcium channel subunit alpha-2/delta-3-like
KO
K04860
voltage-dependent calcium channel alpha-2/delta-3
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04010
MAPK signaling pathway
ocla04260
Cardiac muscle contraction
ocla04261
Adrenergic signaling in cardiomyocytes
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
139370817
09150 Organismal Systems
09153 Circulatory system
04260 Cardiac muscle contraction
139370817
04261 Adrenergic signaling in cardiomyocytes
139370817
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ocla04040
]
139370817
Ion channels [BR:
ocla04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
139370817
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA_N
VGCC_alpha2
dCache_1
VWA
VWA_3
VWA_2
MCP-like_PDC_1
VWA_CoxE
dCache_2
BNR_assoc_N
Motif
Other DBs
NCBI-GeneID:
139370817
NCBI-ProteinID:
XP_070966701
LinkDB
All DBs
Position
17:39816520..39868778
Genome browser
AA seq
1084 aa
AA seq
DB search
MLWNWRILFPHVCCASFLLSWIMLGTVVEVMGSQPGIPLSVVKLWASAFGGEIKSISAKY
SGSQLLQKKYKEFEKSVRVEEIDGMKVVKTLAKKMEEMFRMKKEAMRRLVEAAEEAHLQH
EEDPELQYEYFNAVLINEVDEEGNNVELGGEFVLEPNDHFNNLSVNLSLSVVQVPTNMYN
KDPAIVNGVYWSEALNKVFVDNFEKDPSLIWQYFGSAKGFFRQYPGVKWHPDEHGVIAFD
CRNRKWYIQAATSPKDMVILVDVSGSMKGLRLTIARQTVSSILDTLGDDDFFNIIAYNQE
MHYVEPCLNGTLVRADRNNKAHFREHLDKLFAKGIGLLGDALTEAFTILNDFNQTGHGSV
CSQAIMLVTDGATQMYDDVFAKFNWPDRKVRIFPYLIGRESAFADNMKWMACANKGYFSQ
ISTLADVQENVMRYLHVMSRPKVIDHEHDTVWTEAYVDSTLSQAHKSRNKKGPSLMTTVA
MPVFSTKNETKNQGILLGVVGTDIPLQELMKIIPKHLLGIHGYAFAITNNGYILTHPDLR
PLYQEGQKRRKPNYSSVDLSEVEWEDKDDFLRNAMVNRKTGTFSMEVKKTVDKGKRLLKM
HNDYFYTEVKGTPFSVGVALSRGHGKFFFRGNVSVEAGLLDLEQPDVALADEWTYCNTDE
HRSLSQIQAIKLYLTGRKPHIKCDRELIQEVLFDAVVTAPLEAYWTGLALNKSENSDKGV
EIAYLGTRTGLSRTSLFVVPEHLSNQDFLTAEDKEGVFNADHFPLWYKRAAEQVPGTFVY
SIPFGGNENKSVVLASTAIQLLDDRKSPIVASVGIQMKLDFFQRKFWTASRQCAALDGKC
TISCDNEDIKCYLIDNNGFILVTEDYSQTGLFFGEVESAVMNKLLLMGSFKRITLYDYQA
LCRVYAGSSDSARSLSHPFSIVKWLLTKLVIFLLEFNLYSWWHVDLSVKAQRSRGKTMMV
PCDTEYPAFVSERTIKETTGNIDCEGCARSFVIQQIPSSNLFMVVVDNKCDCSSAPLVSM
DPIEIMYNESLKCDRLKFQKDRKRPETCHPFHPEENAMECGGTASLSAPLTAALLPLLAT
FISR
NT seq
3255 nt
NT seq
+upstream
nt +downstream
nt
atgctgtggaattggaggatcctctttccacacgtgtgctgcgccagcttccttctgtcc
tggattatgctgggcacggtggtagaggtgatggggtcccagccagggattcctctctca
gtggtgaagttatgggcctcagcgtttggtggagaaattaaatcaatttctgcaaaatac
tctggatcccagctgctgcagaagaaatataaagaatttgagaagtccgtccgagtggaa
gaaattgatggcatgaaagtggtcaaaactctcgcaaagaagatggaggaaatgttccgg
atgaaaaaggaggccatgcggcggctggtggaggcagcagaggaggcccatctacagcac
gaggaggacccagagctgcagtatgagtactttaacgcggtgctgatcaatgaggtggat
gaggagggcaacaacgtggagctgggaggcgagttcgttctggaacccaacgaccacttc
aacaacctgtcagtcaacctcagcctcagtgtggtgcaggtgcccaccaacatgtacaac
aaagatccagccatagtgaatggggtgtactggtcagaggccttgaataaagtgtttgtg
gataactttgaaaaagatccatccctgatatggcagtactttggcagtgccaagggcttc
tttaggcagtatcccggggtcaaatggcatccagacgaacacggggtcatcgccttcgac
tgcaggaacaggaagtggtacatccaggcagcgacgtctcctaaagacatggtgatcctg
gtggacgttagtggcagtatgaagggcctgagactgactattgccagacagacggtctcc
tctatactggacacactgggagacgacgacttcttcaacatcatcgcttacaatcaggag
atgcactatgtggagccttgtctgaacggtacactggtgcgagcagacagaaataataaa
gctcatttccgagaacatctggacaagctgttcgccaaagggattggtctgctgggtgat
gctctgaccgaagcgttcaccattttaaatgattttaaccagactgggcatggcagtgtg
tgtagccaggctatcatgctggtgactgacggggcaacgcagatgtacgacgatgtcttc
gccaagttcaattggccagacagaaaggtgcgcatattcccttacctgattggccgagag
tctgcctttgctgataacatgaaatggatggcctgtgctaataaagggtatttcagtcag
atctccacactggctgacgtacaggaaaatgtgatgaggtatcttcatgttatgagtcgt
cctaaagtcatcgaccatgagcatgacacggtctggacggaggcctacgtggacagcact
ctctcccaggcacacaagtccagaaacaagaagggcccaagcctgatgaccactgtggcc
atgcctgtgttcagcaccaagaacgagaccaagaaccagggtatactcctaggggtagtg
ggcacagacattcctcttcaggaactcatgaagatcatccctaaacacctgctgggtatc
cacggttacgcctttgccatcacaaacaacggctacatcctgacccatccggacctgagg
ccactgtaccaggagggccagaagaggaggaaacccaactacagcagtgtggacctgtca
gaagtggagtgggaggacaaggatgactttctgcgtaatgccatggtcaacaggaagact
gggacattctccatggaggtgaagaagacggtggacaaagggaaaagactcctgaagatg
cacaatgactatttctacactgaagtcaagggaactcccttcagtgtcggagtggctttg
tctagaggccatggcaaattcttcttcagaggaaacgtctcagtggaagcagggctcctt
gacctggaacagccagatgttgcgcttgcagatgaatggacgtattgcaacacagatgag
caccgctccctctcccagatccaggccattaaactctacctgaccggacgcaagccacac
atcaaatgtgacagggagctgatccaggaggtgttgtttgatgctgtggtcacagcccca
ctggaggcctactggaccggcctggccctcaacaagtctgagaactcagacaaaggagtg
gagattgcttacctaggcacacgcactggcctctctagaaccagcctgtttgttgtccca
gagcacctatccaatcaagacttcctgacggcagaggataaggagggggtgttcaacgct
gaccacttccctctgtggtacaagagagcagcagagcaggttcccggcaccttcgtctac
tcgatcccctttggaggaaatgagaataagagtgtggttttggccagcactgccatacaa
ctgctggatgacaggaagtcgcctattgttgcctccgttgggattcagatgaagctggat
ttctttcagaggaagttctggaccgctagtagacagtgtgctgctctggatgggaagtgc
accattagctgtgataatgaggacatcaagtgttaccttattgacaacaacggatttatt
ctggtcacagaggactactctcagacggggctgttctttggagaggtggagagtgctgtt
atgaacaagctgcttctcatgggctccttcaaaaggatcactctgtatgactaccaggct
ctctgtagagtgtatgctggcagcagtgacagcgcacgctctctatcacatcccttctcc
atcgtgaaatggctcctgaccaaacttgtcattttcctgctggagttcaacctttacagc
tggtggcatgttgatctctcagtcaaagcccaaaggtcgagggggaagaccatgatggtg
ccatgtgacacggagtaccctgcattcgtctctgagcgtaccatcaaagagaccacggga
aacatcgactgtgaggggtgtgccagatcttttgtaattcagcagattcccagcagtaat
ctcttcatggtcgtcgtggacaacaagtgtgactgcagctctgcccccctggtttccatg
gatcccatcgagattatgtacaatgagtctctgaaatgtgataggctgaagtttcagaaa
gacagaaagcggccagaaacgtgtcatccttttcaccccgaggagaatgccatggagtgt
ggaggaacagcaagcctctctgccccccttacagcagcactgctccccctactggccact
ttcattagcaggtga
DBGET
integrated database retrieval system
