Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139371025
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Entry
139371025 CDS
T10872
Name
(RefSeq) class E basic helix-loop-helix protein 40-like
KO
K03729
class B basic helix-loop-helix protein 2
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ocla03000
]
139371025
Transcription factors [BR:
ocla03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Hairy, Hairy/E(SPL)
139371025
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GFIT
Motif
Pfam:
Hairy_orange
HLH
bHLH_NPAS4
YabA
DUF5365
ApbA
Motif
Other DBs
NCBI-GeneID:
139371025
NCBI-ProteinID:
XP_070967153
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Position
17:49343707..49347868
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AA seq
423 aa
AA seq
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MERIPSAQPTPKHQQAELPDMQGMDFPMYVYKSRRGMKRGDDSKETYKLPHRLIEKKRRD
RINECIAQLKDLLPEHLKLTTLGHLEKAVVLELTLKHVKALTTLLENQQQKILSLQNGMQ
IEQSSPSQENSEEIFRSGFHVCAKEVLQYLVNQEGHGDLTPSHMVNHLHKVATEVLQGPP
CSPCKPRSEETTIHYQHHQAHREKPAGQPPKPSEGHGKNCVPVIQRRYAHAGGEQSGSDT
DTDSGYGGEQVEHLVSHAGYYGQERQLKRALGEKRASFCIKQEDEACHKRSRVESSEDES
LSGGESSSSSSSGHGSYMSAYSPHQAQPHPLCMPFYLIPPSAAAYLPMLEKCWYSGAMPM
IYPGLGGSAQGMPSDRHAPSPSIMMSPRGCSPSPPTVAQSPMDSPAFLQVLKQVLPMNLE
TKD
NT seq
1272 nt
NT seq
+upstream
nt +downstream
nt
atggaaaggattccaagtgcgcaacccacccccaagcaccagcaggctgagctgcctgac
atgcaagggatggatttccctatgtatgtatacaaatcccgtcggggaatgaaacgagga
gatgatagcaaggaaacctacaaactgcctcaccgacttatcgagaagaaaaggcgtgac
aggataaacgagtgcatcgctcagttgaaagatttattgcccgagcacctgaaacttaca
actcttggccatctggagaaggctgtggttttggagctcacacttaagcatgtgaaagct
ctaaccactctactggaaaaccagcagcagaaaatcctcagtctgcagaatggcatgcaa
atcgagcagtcctctcccagccaggagaacagtgaggagatcttccgctcaggcttccat
gtctgtgccaaggaggtgctgcagtacctggtcaaccaggagggtcacggtgaccttaca
ccctcccacatggtcaaccacctgcacaaggtggccactgaggtcctccagggtcctccc
tgtagcccctgcaaaccccggtctgaagagaccaccatccactaccaacatcatcaggcc
cacagggagaagcctgcaggccagccccccaagcccagtgaaggccatgggaagaactgc
gttcccgtcatccagcggaggtatgcccatgcgggcggtgagcagagcggcagcgataca
gacacagacagcggctacggtggcgagcaggttgagcatctggtgtcgcatgcagggtac
tacggccaggagagacagctgaagagggcgctgggagaaaagagggcgtcattttgcatt
aagcaggaagatgaggcgtgccacaaacgcagccgggtcgagtcatccgaggacgagtct
ctctcaggcggagagtcatcctcatcctcctccagcggccacggcagctacatgagcgcc
tactcccctcaccaggcccaacctcatcccctttgcatgcccttctacctcatccccccc
tctgccgccgcctatctgcccatgctggagaagtgctggtactcaggggccatgcccatg
atttaccctggcctgggaggctccgcgcagggcatgcctagtgacaggcatgccccctct
ccctcgatcatgatgtcccccagggggtgctctccctctccccctaccgtagcccaaagc
cccatggactccccggccttcctccaagtgttaaagcaggtacttcccatgaacctggaa
accaaagactga
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