Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139371092
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Entry
139371092 CDS
T10872
Name
(RefSeq) SWI/SNF complex subunit SMARCC2 isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
139371092
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ocla03021
]
139371092
03036 Chromosome and associated proteins [BR:
ocla03036
]
139371092
Transcription machinery [BR:
ocla03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
139371092
Chromosome and associated proteins [BR:
ocla03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
139371092
PBAF complex
139371092
GBAF(ncBAF) complex
139371092
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_1
SWIRM
SWIRM-assoc_3
Myb_DNA-binding
Myb_DNA-bind_6
Chromo
HEAT_GCN1
Motif
Other DBs
NCBI-GeneID:
139371092
NCBI-ProteinID:
XP_070967259
LinkDB
All DBs
Position
17:complement(52852609..52866879)
Genome browser
AA seq
1063 aa
AA seq
DB search
MAVRKKDGGPNVKYFEASDTVSQFDNVRVWLGKNYKKYIQAEPPTNKSLSSLVVQLLQFQ
EEVFGRHVSNPPLTRLPMKSFLDFKSGGALCHILAAAYKFKSDQGWRRFDFQNPSRMDRN
VEMFMTIEKSLVQNNCLSRPVIYLSSDIEAKLLGKLKDIIKRHQGSVTEDKTSSSHVVVP
IPASLEEEEWVRLVMKRDKQVLLHWGYYPDSYDTWISASEVEAAVEEAPSPEKPRKVHAK
WILDLDQFNEWMNEEDYEVGEGGPKRKRISAKTLTDEVTTPGDERRDKKPGSAKKRKRSP
SPSPTPPPQESKKKNTKKGCGPTTPYTKSKRGQREEEPEDLTKDLDEPSPVPAVEEVTLP
KTANTKKDSESTPVKGGTMTDLDEQEDESMETAGKEEEEGSPSVKGEPVKGSDLHEDNVT
EQTHHIIIPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQ
EYLTSTACRRNLAGDVCAIMRVHAFLEQWGLINYQVDSESRPTPMGPPPTSHFHVLADTP
SSLVPLQPKASQTPAAQQILSFPDKVKEKQPADLQNFGLRTDMYSKKTGPPKSKTAASAM
RDWTEQETLLLLEGLEMYKDDWNKVSEHVGSRTQDECILHFLRLPIEDPYLEDTSSSLGP
LAYQPVPFSQAGNPVMSTVAFLASVVDPRVASAAAKSALEEFSRMKEEVPAALVEAHVRR
VEEAARTSGRQDPLYGLEGSGIAGTSLEEGEKPEESSEESKSDSQSSEEKRETKENKEGA
MEEGEKQGENGKKEEERGREGEGEGEQEAEKTDSEMGDGEKDKEGKEGSEESQREGESEG
ERKAKVERDVGEGNLATAAASALAAAAVKAKHLAAVEERKIKSLVALLVETQMKKLEIKL
RHFEELETIMDREREALEYQRQQLLADRQSFHMEQLKYAEMRARQQHFQQIQQHSQTGGP
HSAPAPTGPPPPPQGPSATQSQPTLSTPAPQPAPSPAPPTTSIPSSAQPAEPQPPPSGPH
TSPPRPPGQPPTAHSSTTPTLHEPSATLPEDTHHSSAPVPPPQ
NT seq
3192 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcggaagaaagacggcggcccgaacgtaaaatatttcgaagcgtctgataca
gtctcgcagttcgacaatgtccgcgtttggttgggcaagaattataaaaagtacatccag
gcggagccccccaccaacaagtctctgtccagcctggtggtccagctgctgcagtttcag
gaggaggtgttcggacgacatgtcagcaacccacctctcaccaggttgccgatgaagagt
ttcctggactttaagtctggtggggctctctgccacattctggctgcagcctacaagttc
aagagcgatcagggctggcgcaggtttgactttcagaatccttctcggatggaccgcaat
gtggagatgttcatgactatcgagaaatctctagtacagaacaactgtctgagtcgacca
gtgatctacctgagctctgacattgaggccaagctactggggaaactgaaggacatcatc
aagaggcaccagggctcagtgactgaagacaagacgtccagctcccatgtggtggttccc
atccctgccagtcttgaggaggaggagtgggtgcgtctggtaatgaagagagacaagcag
gtgctgctccactggggatactatcctgacagctatgacacctggatctcagccagtgag
gtggaggctgctgtggaagaagcgcccagcccagagaaacccaggaaggtccatgccaag
tggatcctggaccttgaccagtttaatgagtggatgaatgaggaggactatgaggtgggg
gaggggggccccaagaggaagagaatctcagccaagaccctgacggatgaggtcaccacc
ccaggggacgagcgtcgtgacaagaagcccggcagtgccaagaagaggaagcgctcgccc
tccccctcgcccaccccaccaccccaggagagcaagaagaagaacacaaagaaagggtgt
gggcccaccaccccatacactaagtctaagcgaggccagagagaggaggagccagaggat
ctgactaaagatctggatgaaccatcacctgtacctgcagtggaggaggtcaccctacct
aagacagccaacactaagaaagactctgagtcaacaccagtaaagggaggtaccatgaca
gacctggatgagcaagaggatgaatccatggaaactgcaggaaaggaggaggaggagggc
tctccgagtgtgaagggagagccggtgaaagggtcggacctccatgaggacaacgtgacc
gagcagacccaccacatcattatccccagctatgctgcctggttcgactacaacagtgtc
catgctatcgagcgtagagccctcccagagtttttcaacggcaagaacaaatccaaaacc
cctgagatttacctggcctataggaacttcatgatagacacgtacaggctgaacccgcag
gagtaccttacctccaccgcctgccgtaggaacctggccggagacgtgtgtgccatcatg
agggtgcatgcgttcctggagcagtggggtctgatcaactaccaggtggactcagagagc
cggcccacccccatgggccccccgcccacctcccacttccacgtcctggctgacaccccc
tccagcctggtgcccctgcagcccaaggcctcccagactccggcggcccagcagattctg
tccttcccagacaaggtgaaggagaagcagccagccgacctgcagaactttggcctgagg
acagacatgtacagcaagaagactgggcctcctaagagtaagactgctgccagcgccatg
cgagactggaccgaacaggagacactactgctgctagagggtctagagatgtacaaggat
gactggaacaaggtgtcggagcacgtgggctcacgtacccaggacgagtgtatcctacac
ttcctgcgtctgcccatcgaggacccatacctggaggacacgtcctcgtccctgggcccc
ctggcctaccagcccgtccccttcagccaggcaggcaaccccgtcatgagcacagtggcc
ttcctggcctccgtggtggacccccgcgtggcctccgcagccgccaaatctgccctggag
gagttttcccgtatgaaggaggaggtcccagcagcactggtggaggcccatgtgaggagg
gtggaagaggcggcgcggaccagtggcagacaggaccccctctacggcctggaaggcagc
ggcatcgcaggcaccagcctggaggagggagaaaaacctgaagagagcagtgaggagagt
aaaagtgacagccaatccagtgaagagaagagggagaccaaggagaacaaagagggagcc
atggaagagggggagaagcaaggagaaaacgggaagaaggaggaggagagaggaagagag
ggagaaggagagggagagcaagaggctgagaagaccgactcggagatgggtgatggagag
aaggataaggaagggaaggagggctcagaggagagccagagagaaggagagagtgaggga
gagaggaaggctaaggtggagcgggatgtgggagaggggaacctggctaccgcagctgcc
tctgccctggctgctgctgccgtcaaagccaagcacctggctgctgtggaggagaggaag
atcaagtctctggtggctctgttggtggagactcagatgaagaagctggagatcaaactt
agacactttgaagagctggagaccatcatggaccgagagagggaggcgttggagtaccag
aggcagcagctactggcagaccgtcagtcgttccacatggagcagctgaaatatgcagag
atgagggcgcgtcagcagcacttccaacagatccagcagcacagccagactggaggccca
cactccgccccggcccccactggccccccacccccaccccagggcccctcagccacccag
tcccagccaaccctcagtacccctgcaccacagccagctcccagcccagcaccccctacc
acctccatcccttcctctgcccagcctgctgagccccagccgccccccagtggtcctcac
acctcacctccccgcccgccaggccagccccccacggcccactccagcaccaccccaaca
ctccacgagcctagtgccactctacctgaggatacacaccactcctcagccccagttccc
cctccacagtga
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