Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139371157
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Entry
139371157 CDS
T10872
Name
(RefSeq) splicing factor 3B subunit 3
KO
K12830
splicing factor 3B subunit 3
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
139371157
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ocla03021
]
139371157
03041 Spliceosome [BR:
ocla03041
]
139371157
03036 Chromosome and associated proteins [BR:
ocla03036
]
139371157
Transcription machinery [BR:
ocla03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
139371157
Spliceosome [BR:
ocla03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
139371157
Complex B
139371157
Complex C
U2 SnRNP specific factors
139371157
Chromosome and associated proteins [BR:
ocla03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
139371157
TFTC complex
139371157
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_BBS7
Beta-prop_EML
Motif
Other DBs
NCBI-GeneID:
139371157
NCBI-ProteinID:
XP_070967383
LinkDB
All DBs
Position
2:complement(61873382..61913369)
Genome browser
AA seq
1217 aa
AA seq
DB search
MFLYNLTLQRATGITHAIHGNFSGTKMQEIVVSRGKIIELLRPDANTGKVHTLLTMEVFG
IIRSLMAFRLTGGTKDYIVVGSDSGRIVILEYHPSKNMFEKIHQETFGKSGCRRIVPGQF
LAVDPKGRAVMIGAIEKQKLVYILNRDAAARLTISSPLEAHKANTLVYHVVGVDVGFENP
MFACLEMDYEEADNDPTGEAAANTQQTLTFYELDLGLNHVVRKYSEALEEHGNFLITVPG
GSDGPSGVLICSENYITYKNFGDQPDIRCPIPRRRNDLDDPERGMIFVCSATHKTKSMFF
FLAQTEQGDIFKVTLETDEEMVTEIRMKYFDTIPVATSMCVLKTGFLFVSSEFGNHYLYQ
IAHLGDDDEEPEFSSAMPLEEGDTFFFQPRPLKNLVLVDEQENLSPIMSCQIADLANEDT
PQLYVACGRGPKSTLRVLRHGLEVSEMAVSELPGNPNAVWTVRRHIEDEFDAYIIVSFVN
ATLVLSIGETVEEVTDSGFLGTTPTLSCSLLGEDALVQVYPDGIRHIRADKRVNEWKTPG
KKTIVRCAVNQRQVVIALTGGELVYFEMDPSGQLNEYTERKEMSADVVCMSLANVPPGEQ
RSRFLAVGLVDNTVRIISLDPSDCLQPLSMQALPAQPESLCIVEMGGVEKEDELGVKGTV
GFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRVRMQGQEAVLAMSSRSW
LSYSYQSRFHLTPLSYETLEYASGFASEQCPEGIVAISTNTLRILALEKLGAVFNQVAFP
LQYTPRKFVIHPETNNLILIETDHNAYTEATKAQRKQQMAEEMVEAAGEDERELAAEMAA
AFLNENLPEAIFGAPKAGSGQWASLVRLVNPIQGTTLDLVQLEQNEAAFSVTVCRFASGG
DDWYVLVGVARDMILNPRSVGGGFIYTYRLGGGGDKLEFMHKTPVEDVPLAIAPFQGRVL
VGVGKLLRIYDLGKKKLLRKCENKHVPNLVTGIHTIGQRVIVTDVQESLFWVRYKRNENQ
LIIFADDTHPRWVTTACLLDYDTMASADKFGNISIVRLPPNTSDDVDEDPTGNKALWDRG
LLNGASQKAEVIMNYHIGETVLSLQKTTLIPGGSESLVYTTLSGGIGILVPFTSHEDHDF
FQHLEMHMRSEFPPLCGRDHLSFRSYYFPVKNVIDGDLCEQFNSMDPHKQKSVAEELDRT
PPEVSKKLEDIRTRYAF
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
atgtttctgtataacctgaccctgcagcgtgccactggcatcacccacgccatccatgga
aacttctcaggaaccaagatgcaggagatagttgtttccagggggaagataattgagctg
ctgcgtccagatgccaacacagggaaggttcacaccctgcttaccatggaggtgtttggc
atcattcgctccctcatggccttcaggctgacaggaggaactaaagactatattgtggtg
ggcagtgactcaggccgcatcgtgatccttgagtaccacccctccaagaacatgtttgag
aagatccaccaggagacctttggcaagagtggatgtcgtcgcatcgtccctggacagttc
ctcgccgtcgaccctaagggcagagcagtcatgataggtgccattgagaagcagaagctg
gtgtacatcctgaacagagatgcagcagcgcgtctcaccatctcctctcccctggaggct
cacaaggccaacacgctggtctaccatgtggtaggagttgatgtgggctttgaaaacccc
atgtttgcctgtctggagatggactatgaggaagctgacaatgaccccactggcgaggct
gcagccaacacccagcaaaccctgaccttctatgagctggacctgggtctgaaccacgtt
gtgcgcaagtacagcgaggccctggaggagcacggcaacttcctcattacagttcctggg
ggctctgatgggcccagtggagtactcatctgttcagagaattacatcacctacaaaaac
tttggagaccagcctgacattcgctgtcccatcccacgcaggaggaatgacctggatgac
cctgagcgaggcatgatcttcgtctgctcagccacccacaagaccaagtccatgttcttc
ttcctggcccagacggagcagggtgacattttcaaggtcaccctggagaccgatgaggag
atggttacagagatcaggatgaagtacttcgacaccatacctgtagccacatccatgtgt
gtgctgaagaccggcttcttatttgtgtcctcagagtttggtaaccattacctgtaccag
atagcccatctgggagatgacgatgaagagccagagttctcctctgccatgcccctggag
gagggagataccttcttcttccagccacgccccctcaagaacctggtgctggtggacgag
caggagaacctctcccctatcatgtcctgccagattgctgacttggctaatgaggacact
cctcagctgtatgtggcctgtggcaggggacccaaatccaccctccgtgtcctcagacat
ggactggaggtatcagagatggctgtgtctgagctgcccggtaaccccaatgctgtgtgg
actgtgcgccgacacattgaagatgagtttgacgcgtacatcatcgtttccttcgtcaac
gccaccctggttctgtctatcggtgagaccgtagaggaagtgacagactctggcttcctg
gggaccacccccaccctctcctgctctctgctcggggaggatgctctggtgcaggtgtat
cctgatgggatccgtcacatccgtgctgataagcgtgtgaatgagtggaagactccaggg
aagaagaccattgtgcgctgtgcagtcaaccagaggcaggtggttatcgctctgaccgga
ggagagctagtctactttgagatggacccttctggccagctgaatgagtacacagagagg
aaggagatgtcagctgacgtggtgtgtatgagcttggccaatgtcccccctggcgagcag
cgctcccgtttcctggcggtggggctggtggacaacaccgtccgcatcatctcactggac
ccctcggactgtctccagcccctcagtatgcaggccctgcctgcccagcctgagtctctg
tgtatagtggagatgggaggagtggagaaggaagatgagctaggagtgaagggcactgtc
ggctttctctacctcaacatcggactgcagaatggtgtgttgctcaggaccgtgctggac
ccagtgactggagacctgtctgatactcgtactcggtacttggggtcgcgacctgtgaag
ctcttccgcgtcaggatgcagggacaggaagctgtgttggccatgtcgagtcgctcctgg
ctgagttattcctaccagtcccgattccatctgacgcccctgtcctatgagacgctggaa
tatgcctctggcttcgcctctgaacagtgtccagagggcattgtggcaatctctaccaac
accctgaggattctggctttggagaagctgggtgccgtgttcaaccaggtggccttcccc
ctgcagtacacacctcgcaagtttgtcattcacccagagacaaacaacctgatactcata
gagactgatcacaatgcctacacagaggccaccaaggcccagcgaaagcagcagatggca
gaggagatggttgaggcagctggtgaggatgagagggagcttgcagcagagatggctgct
gccttcctcaatgagaacctgccagaggccatctttggggcgcccaaggccgggtctggc
cagtgggcctctctggtgcgtcttgtcaaccccatccagggaaccactctggaccttgtc
caactggagcagaatgaggctgccttcagtgtgactgtttgtcggtttgccagcggaggt
gatgactggtatgtgctggtgggggtggcccgggacatgatccttaacccccgctctgtg
ggaggcggttttatctacacctatcggctgggagggggaggggacaaactggagtttatg
cacaagactccagtggaggacgttcctctggcaatcgccccgttccagggccgtgtgctg
gtgggcgttggcaaactgctgcgcatctatgacctgggcaagaagaagctgctccggaag
tgtgagaacaagcatgtgcccaacctggtgactggtatccacaccatcggtcagcgggtc
atagtgactgatgtacaggagagtctgttctgggtgcgctacaagcgcaacgagaatcag
ctgatcatcttcgctgacgacacccaccctcgctgggtcaccactgcctgcctgctggac
tacgacaccatggcttcagccgacaagtttggcaacatcagcattgtgcgccttccccct
aacaccagtgacgatgtggatgaggacccaactgggaacaaagcattgtgggatagaggt
ctgctgaacggagcttctcagaaggctgaagtgatcatgaactaccacattggggagacg
gtgctgtcactgcagaagaccacactgatccctggaggctcggaatctctggtctacaca
actctttctggaggcatcggcatcctggtgcccttcacttcccacgaggatcatgacttc
ttccagcacttagagatgcatatgcgctcagagttcccccctctgtgtggcagagaccac
ctcagcttccgctcctactacttccctgtaaagaatgtgatagatggagatctgtgtgag
cagttcaactccatggacccccacaagcagaagagtgttgctgaggagctggaccgtact
ccccctgaggtctcaaagaaactggaggacatccgcacacgctatgccttctag
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integrated database retrieval system
