Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139371208
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Entry
139371208 CDS
T10872
Name
(RefSeq) protein NLRC5
KO
K22615
NLR family CARD domain containing 5
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
ocla04054
]
139371208
Pattern recognition receptors [BR:
ocla04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
139371208
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
NACHT
LRR_6
LRR_4
NLRC4_HD2
Atypical_Card
LRR_8
AAA_30
AAA_22
TsaE
Motif
Other DBs
NCBI-GeneID:
139371208
NCBI-ProteinID:
XP_070967502
LinkDB
All DBs
Position
2:complement(62094252..62117683)
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AA seq
1856 aa
AA seq
DB search
MEAEEDVQSVLTQETHELADILGYQDDAVLSKLYKMMDSRARERLVRAASHRERILEMLG
YFSTADPAMCRQFLQMVCMHCDMPMRLESRLMSVTGSVTSDPWPTLAREALSLCDPEEVI
KNNSHTLVDESIASQGWCVKRPRIDHVESYKAAVRRFLLQRWERVMQGVVKEVRLEEAWV
SLRHRTHVRPRDRADGALSPSELPQGDEEGTVEDRVTVHSLLGSEAQVTLLLGQAGSGKT
LLMHCLGQKWTQDASPSFHLLILLEFRQLNLVARPLSLKELLFRFFLPPEGGEEECTAVL
DFILENPEKICLIFDGYDEFHTKITHSGKLNSSFDPLCPLPMAELISGLCSRRILPGCTL
LITCRPRDVTDLESSVDCIGELLGFNQRSVKEYAEQYFQDKGLNLKEKAVSHLLANHHLL
TMCYLPALCHICCVCLDHIFSSGGSELLPQLPNTLTQVYLQILCAFLSRCPGSSTPLLQS
HRAEVTLLGRLAMRGLEGSKIVFLSEEVPPDLVDFATKAGLLSQVDLTHEDGSKGQGYTF
MHLTMQEFLGALHIMTSDDITEAQLRKKFTLKTRWTTKSNPKTVFTDSLHLYVCGLAAPA
CFSYLLQLVRGDGAVAWVKKRLALVRKLLRSLAMSTNLTGPKVVELCHCVQETQDAQLAR
EMVGSRPSFELRNITLNPVDLDALAFVVSSAGVGIGLDFGACSMELECLDILPSCQHIDF
LIFRSRKYDDRFADKLSCILPRLPTLKRFEFICGNLTDVGAAKLARALQSCPQITELNFS
DNSLTDRGVREIADIFPKLPSLASVSLGKNGCSLESIYILLEKITSSPSIQGLYAEGMKD
VSVLFVPSIDMKCSMDKTGLTVSLLNCRFTTDQMNRLCQLLARCPGLSVLDLSGADIKDD
TLKALTESLQELNISKQIVLNEIPISVDGLMVLTSFLSVCPDVVQVDISLQDPVRVSILF
AGGIEKQHPEMSKKLRLIGCALLPPHLDHLCENLTDCSALTLLDISNNSLGNKGLKKLLD
LLPQLSNIQEINVSENAVSMEGVVLLADTLCSHRNMSEVNVSHGGKKLFLKFHSSKRIQS
EALRTSPDMEQDKKLSLTHSDIQPTDMTRLCRRLVQCPGLLKLDFSHGSLKDDAIENLLN
ILPKMTSLQLLNMSHVQMSTDGVLLLVRSLIDCQRVRAVELRPQGEAFIKFVNMKAEQAT
CRLTQYTLSSGDVEKLSGILEQCPHLSDLDLSSNLLRDEGVKSFVDSLPRLRIASSVNLN
DNRLTQMGALYLVNTVMTCEKVAAVEVSLGTEERSVIRFEQDSDCGKTLSLRECHFGADH
LQRLAEILTRCAAQLVKLRIRNNGLSVQVIEDLVKQLRCGHVQRYISIEEPWITAEAAVN
LLSCCLNLNPNIHTIGVNNSTVHITLEECQNPTATSGGTSTDMSGSLSTVTISLVNCAVQ
GHHLVSLQTVFQRCVLLQELDLSYNSIGRVGAEFLCSVLPSLASLRKLSLETKETSEDVV
LLLAEGLLQAKSIESLNLSGHMITDREAVALTRTLQNLPHLRTINLSLCYGWTPAGALEL
VRGLGRCLSLEGISLDSVQLDEESTVCLAQGLHAMTSLKRLNLNKKVTMVTGSPWVGATL
VLLASLEGLRGMEELELDGMRISDNGVEELIKHLPTWSGLRKISLSGNCISDQAGERLVQ
ALTTCTALEELNLSRNNLSLACAAKMGQVLPTLTHFRVLDLSENEIGTKGSVSISKALIS
MKYLTKIHLTSIGTSELAGLADSLAHCVCAEDVSFAWNDCGDDVAVKLAEVLPQCQKLRR
LDLESNSISTIGAEALARSLQSCPSVEVIRLWRNFISTSDAQKLRQREKRLNFSST
NT seq
5571 nt
NT seq
+upstream
nt +downstream
nt
atggaagcagaggaagatgtccagagtgtattaacacaagagacccatgagctggcagac
attctgggctatcaagatgatgcagttctctccaaactctataaaatgatggacagcaga
gcgcgggaacggctcgtgcgcgctgccagtcacagagaacgcatcctggagatgttgggt
tacttcagcacagcagaccctgctatgtgccgccaatttcttcaaatggtctgcatgcac
tgcgacatgccaatgcgcctggaatctcggctgatgtctgtgaccggatctgtgactagt
gatccttggcctacactggcaagagaggccctatccctctgtgatccagaagaagtaatt
aaaaacaacagccataccctggttgatgagtctatagcatctcaaggttggtgtgtaaaa
cgcccacgaatagaccacgtagaaagctacaaggctgctgtgaggagatttctactgcag
aggtgggagagggtgatgcagggtgtggtgaaggaggttcgtctggaagaggcctgggtt
agccttcgccacagaacccatgttagacccagagacagggctgatggagctctgagcccc
tcagagcttccacagggggacgaggaggggactgtggaagacagggtgactgttcactcc
ctcctgggttcggaagcccaggtcacactgctgttaggccaggcagggtcagggaagaca
ctactgatgcactgccttggccagaaatggacacaggacgcctctccctcctttcaccta
ctgatcctgctagagttccgccagctcaaccttgtggctcggccgctctctctgaaggag
ctgctctttcgcttcttcctcccaccagagggtggggaggaggagtgtaccgctgtactt
gacttcatccttgaaaaccctgagaaaatatgcttgatctttgatggctacgatgagttt
cacactaaaataacccactcagggaaactgaacagctcatttgacccactgtgcccactc
cccatggcagagctgatctcaggcctgtgcagtcgcagaatcctcccaggatgcactctg
ttgattacctgtaggcctcgggatgtgacagacttggagagctctgtggactgcattggg
gagctgctaggtttcaaccagcgcagtgttaaagaatatgctgaacagtacttccaggac
aagggtctgaatctgaaggagaaggcagtgagtcatctactggccaaccaccacctcctc
accatgtgttacctgccagccctctgccatatctgctgtgtgtgcctggaccacatattc
tccagtggtgggtctgagcttttaccccagcttccaaacaccctcacccaggtctacctc
cagatcctctgtgcctttctgagccgatgcccagggagcagcacacccctgttgcagagt
cacagggcagaggtcacactgctgggccgcctggccatgaggggcctggaggggagcaag
atcgtgttcttgtctgaagaggttccaccagacctggtggacttcgccactaaggctggt
ctcctctcacaggtggacctgacccatgaggatggatctaaaggccagggctacacattc
atgcacctcaccatgcaagagtttctgggcgcgctacacatcatgaccagcgacgacatc
acagaggcccagctcaggaagaagttcaccctcaagacccgctggaccacgaaatcaaac
cccaagacggttttcactgactccctccatctgtatgtttgtgggcttgctgcaccagcc
tgcttctcttacctgcttcagcttgttcggggagatggggctgtggcgtgggtgaagaaa
cgcctggcactagttcgcaagttgctccgaagcctggcaatgagcaccaacctgactggg
cccaaggtggtggagctgtgccactgtgtccaggagacccaggatgcccaactggccagg
gagatggtggggtcgcgaccctccttcgaactaaggaacatcacattgaaccctgttgat
ctggatgccctggcctttgtcgtctcgtctgctggagtgggcatcgggttggactttgga
gcctgttctatggagctggagtgtctcgatattctacccagctgccagcacatcgacttt
ctaatttttcgaagccgtaagtatgatgacagatttgcagataaactttcttgcatcctt
cccagactaccaaccctgaaaagatttgagtttatctgtggtaacctcactgatgtggga
gctgccaaacttgccagagccctgcagagctgtccacagatcacagagctcaatttcagt
gacaacagcctgacagacagaggagtcagggagatcgctgacatctttcccaagctgccc
agtctggcctctgtctcgttggggaagaatggctgctctctggagagtatctacatcctt
ctagagaagatcacttccagcccctccatccagggactctatgctgagggaatgaaggac
gtcagtgtcctatttgtcccaagcatagacatgaaatgttctatggataaaactggactg
actgtcagcctgttgaactgcagattcactactgaccagatgaacagactgtgtcagttg
ctagcgagatgtcctggtctctctgtcctggatctctcaggagccgacatcaaggatgat
actctcaaggccctgactgagtctctacaggagctgaacatctccaaacagattgttctg
aatgagattcccatatctgttgatgggttgatggttctgaccagtttcctgtctgtatgt
cctgatgtggttcaagtggacatcagcctgcaggaccctgtgcgtgtgtctatacttttt
gctggggggatagagaaacaacatcctgagatgtctaagaaacttcgtctgattggctgt
gctcttcttccccctcacttggaccatctgtgtgagaatctgacggactgctctgctctg
actctgctggatatttccaacaattctctgggaaacaaaggtctaaagaagttgttagac
ctcttacctcagcttagcaacatccaggaaatcaatgtcagtgagaatgcagttagcatg
gaaggggtggtgctgctagctgacacgctctgctcacacaggaacatgagcgaagtgaat
gtcagtcacggggggaagaagctgttcctgaaattccattccagtaaaagaatacaatca
gaagcactcaggacctcaccagatatggaacaggataagaaactcagtctaactcacagt
gatatccagcccactgacatgaccaggctgtgtagaagactggtacagtgtcccggccta
ctgaagctagatttctcccatggatccctgaaggacgatgccattgaaaatctattgaat
atcctgcctaagatgacatctcttcagctgctcaatatgagccatgtccagatgtctacg
gacggagtgttgttattggtcagatctctgatagactgtcagcgtgtcagagctgtggaa
ctcaggccccaaggagaagcgttcatcaagtttgtcaacatgaaagcagaacaagcaact
tgcagactcacccagtacacactgagcagtggggatgtggagaaactctctgggatcctg
gagcagtgtcctcatttgtctgacctggatttatccagtaacctcctgagagacgaggga
gtgaagagctttgtggattctctgccaaggctgcggattgccagctcagtgaatcttaat
gataacagactgacccagatgggggcgctctacctggtgaacacagtgatgacctgtgag
aaggtggctgcagttgaagtcagtttgggaactgaggagaggtcagtcatccgctttgaa
caggacagtgactgtggcaaaactctgagtctgagagagtgtcattttggggctgaccat
ctgcagagactagcagagattctgacacgctgtgctgctcagttggtcaagctgaggata
agaaacaacggactgagtgttcaggtgattgaagacttggtgaagcagctgaggtgtggt
cacgtccaacgctatatcagtattgaggagccatggatcacagcagaagcagctgtaaac
ctgctctcctgctgcttgaacctgaaccccaacatacacaccatcggggtcaataattcc
actgtacacattactttggaagaatgccaaaatcccactgctaccagtggtggcacttct
acagacatgtctggctctctgtctacggtgaccataagcctggtaaactgtgcagtgcaa
gggcaccacctagtgtctctgcagactgtgttccagaggtgtgttctgctacaggaacta
gatttgtcatacaacagcattggtagagtgggagcagagttcctctgctctgtcctacca
tccttagctagtctgcggaaactcagtcttgaaacaaaagaaacctctgaagatgtggta
ttgctccttgccgaggggttgttgcaggctaaaagcattgagagcttgaatttgtctggt
catatgattactgacagagaagctgtagctctgaccagaacactccaaaaccttcctcat
ctcagaacaatcaatctgtccctctgctatggttggacaccagcaggggccttggagctg
gtgagagggctgggacggtgcctctctctggaagggatcagccttgactctgtacagctg
gatgaggagagcacagtgtgcctggcccaaggtctccatgctatgacctccttgaagagg
ctgaatctgaataagaaagttaccatggtgactggatccccatgggtgggggccactctg
gtcctgctggcctctctggaggggctcagagggatggaggagctagagttggatgggatg
aggatttcagataatggagtggaggagcttatcaaacacctgcccacctggtcaggcctg
aggaagatcagcctgtcagggaactgcatcagtgaccaagcaggagagaggctggtccag
gccctgacaacctgcacagcactggaggagctcaatctgtcaaggaataatctcagcctt
gcctgtgctgccaagatgggacaagttctgcccactctcactcacttcagggttctagat
ctctcagagaacgagattggtacaaaaggatctgtcagtatctccaaagccttgatctcc
atgaagtatttgacaaagatacacttgacctccatagggacttcagagcttgctggtctg
gctgacagcctggctcactgtgtctgtgcagaggatgtcagttttgcgtggaatgattgt
ggagatgatgtcgcagtgaagcttgccgaggttttaccacaatgccagaagctaaggaga
cttgatctagagtctaacagtatcagcactattggagcagaggcacttgccagaagctta
cagtcttgtccatcagttgaagtgatcagactgtggaggaattttatttctaccagtgat
gcccagaaactgagacagagggagaagaggctcaacttctcctccacatag
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