Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139371291
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Entry
139371291 CDS
T10872
Name
(RefSeq) E3 ubiquitin-protein ligase PDZRN3-B-like isoform X1
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ocla04121
]
139371291
Enzymes [BR:
ocla01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
139371291
Ubiquitin system [BR:
ocla04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
139371291
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
zf-C3HC4_2
zf-C3HC4
zf-RING_UBOX
zf-RING_2
zf-C3HC4_3
zf-RING_5
zf-C3HC4_4
Prok-RING_4
Sina_ZnF
zf-TRAF
PDZ_Tricorn
TRAF3_RING
zf-rbx1
U-box
RING_XB3-XBAT31
LemA
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
139371291
NCBI-ProteinID:
XP_070967690
LinkDB
All DBs
Position
17:complement(66283708..66414446)
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AA seq
1058 aa
AA seq
DB search
MGFELDRFKGSVDPDFKCNLCNKVLEDPLTTPCGHVFCASCVLPWVIQKSSCPVKCQRIS
TTELNHVLPLKNLILKLDIKCDNHARGCEKVVKLHHLAEHAEMCDYSPAKCRNKGCKEVL
NLKDMDAHMRESCDYRPVGICDSGCGLMLIHKEQRLDTHCCLKAMKAHNSALHGKVINLD
KEFKKQSLKSSKREKSLLAQLSAVHNELQMTALKYQKKFTEYSARIDSLTRTLAPPCKGG
ETKNLTAILHREGGSLGFNIVGGRPCADDHEGTSNEGIFVSKIVEKGPTDKEGGLQIHDR
IMEVNGKDLSKATHDQAVEVFRTAKEPIMVHVLRRAPRPKPSIPASDTEVVDISTQTDIT
FQHIMALTKLPTTTPAVAVLEQYLMPEEHSPGHEYFEPNDFLEGMQQEMDREELEYEEVD
LYRTNIQDKLGLTVCYRTDDEDETGIYVSEIDPNSIAAKDGRIREGDRIIQINGIEIQNR
EDAVALLTSEENQNVCLLVARPEIQLDEGWMDDDRNDFLDDLHMDMLEQQHHQAMQFTAS
MLQQKKHEEDGGTTDTATLLSNHHEKDSGVGRTDESTRTDESTRNDESSEQENLGDDQTT
ASNTLGSCSRMKLTYNQDTLGSTELPFSSESFISADYDHADFLGIPADECERFRELLELK
CQVRSMGGPHGLYCQSARAGRAEEGVDKELELLNEELHSIELECLNIVRAHKMQQLREQY
RESWMLHNSGFRNYNTSIDARRHELSDINELPEKSDKDSSSAYNTGESCRSTPLTLELSP
ENSLRRGEENQGEAGAYSSAGLNNRILKPLLSPVQEADGPSRIRPSSSKECDLQAEEKER
KLGESTHKLAQPRSLYKHAHIPAHAQHYQSYMHLIQQKSAVEYAQSQMSLVSLVSRGDPV
TPRDMLEPKKEWKVKIRSDGTRYITKRPIRDKLLKERALRIREERSGMTTDDDAISELKI
GRYWSKEERKQHAVRAKEQKQRREFMKQSRADCLKEQASLDDDKKEPNIIELSHKKMMKK
RNKKIFDNWMTIQELLTHGAKSPDGTRVYNSLLSVTTV
NT seq
3177 nt
NT seq
+upstream
nt +downstream
nt
atgggatttgagttggatcggtttaaagggtctgtggacccagattttaaatgcaatttg
tgtaataaagttctagaagacccgctcactactccgtgtggtcacgtcttctgcgcaagc
tgtgtgctgccatgggttatccagaaaagcagctgccccgtcaaatgtcaaaggatctct
acgacagagctgaaccacgttctccctctgaaaaacctgattctgaagctggacataaag
tgtgacaaccatgccagaggctgtgaaaaagtggtaaagctgcaccatctagcagagcat
gccgagatgtgcgattactcaccggccaaatgcaggaataaaggatgcaaggaggtgctc
aatctgaaggacatggatgcccatatgcgcgaatcgtgtgattacagaccggtcgggata
tgcgacagtggatgtggcttgatgctcatccacaaagagcaaagattagacacccattgc
tgtttgaaagccatgaaagcacataatagtgcattgcacgggaaggtgatcaacttggac
aaagagttcaagaagcaatcattgaaatcaagcaaaagagagaaatcacttcttgctcaa
ctctccgcggtgcacaatgagctacaaatgacagcgctgaagtatcagaagaaattcact
gaatacagtgcaaggatcgattcgctgactaggacccttgctcccccgtgcaagggcggg
gagacaaaaaacctcacagccatccttcatcgggagggaggttctctgggcttcaacatc
gtgggaggacgaccatgtgcggacgaccatgaaggcacttcgaatgaaggaatttttgta
tccaagatcgttgagaagggaccaacagacaaggagggaggccttcagatccacgacaga
ataatggaggtgaatgggaaggacctgtccaaggccacccatgaccaggcagtggaggtc
ttccgcacggccaaggagcccatcatggtccatgtgcttcgccgggccccccgccccaaa
ccctccatccctgcctcagacaccgaggtggtagacatcagcacccagacagacatcacc
tttcaacacatcatggccctcaccaagctacctaccaccacccccgccgtggctgtgctg
gagcaatacctaatgcctgaagagcattcccctgggcacgagtactttgaacccaatgat
ttcctggagggcatgcagcaggagatggatcgagaggagctggaatatgaggaagtggat
ttgtacagaaccaacatccaggacaagcttggtttgactgtctgctacaggactgatgat
gaggacgagactgggatctatgtcagtgagattgacccaaacagcatcgctgcaaaggat
ggcaggatcagagagggagatagaattatccagatcaatggaattgagatccagaaccga
gaggatgctgtggctttgttgaccagtgaggagaatcagaatgtgtgcctactggtagcc
agaccagagatccagctggatgagggttggatggatgacgacaggaatgacttcctggat
gacctccacatggacatgctagagcagcagcaccaccaggccatgcagttcaccgccagc
atgctgcagcagaagaagcatgaggaggatggtggaacaacggacacagccaccctgttg
tccaaccaccacgagaaggatagtggggttggccgcaccgatgagagcacgcgcaccgac
gagagcacacgcaacgacgagagctctgagcaggagaacctgggggatgaccagactaca
gcctccaacacactgggcagctgcagccgcatgaagctgacctacaaccaggacaccctg
ggcagcactgaactgcctttcagcagtgagtccttcatctctgcagactacgaccatgct
gacttcctgggtatccctgccgatgagtgtgagcgcttccgagagctcctggagctgaag
tgccaggtgaggagcatggggggcccccatggcctgtactgccagagtgccagggccgga
agggccgaagagggggtggacaaggagctggagctgctgaacgaggagctgcacagcatt
gagcttgaatgcctcaacatcgtccgggcccacaagatgcagcagctaagggagcagtac
cgcgagtcgtggatgctgcacaacagcggcttccgcaactacaacaccagcatcgatgcg
cgccgccacgagctctctgacattaacgaactgcccgagaagtcggacaaggacagctcc
agcgcctacaacactggagagagctgccgcagcacccccctcaccctggagctgtcccca
gaaaactccctccgaaggggggaagagaaccagggcgaggccggggcctacagcagcgca
ggcctcaacaacaggatcctcaagcccctgctgtctcctgtccaagaggccgatggcccc
agcagaatcaggccctcctcctctaaggagtgtgacctgcaggcggaggagaaggagcgt
aagctgggagagtctactcacaagctggcccagccccgctccctgtacaaacatgcccac
atcccggcccatgcccagcactaccagagctacatgcacctgatccagcagaagtctgcc
gtggagtatgcccagagccaaatgagcctggtcagtctggtcagccgcggtgaccctgtg
acccccagagacatgctggagcccaagaaggagtggaaggtgaagatccgcagcgatggc
acacgctacatcaccaagaggcccatcagggacaagctgctgaaggagcgcgccctgcgt
atccgcgaggagcgcagcggcatgaccacagacgacgacgccatcagcgagctgaagatc
gggcggtactggagcaaggaggagaggaagcagcacgcggtgcgagccaaggagcagaaa
cagcgccgcgagttcatgaagcagagccgcgccgactgcctgaaggaacaggccagcctg
gatgacgacaagaaggagcccaatatcattgagctgagccacaaaaagatgatgaaaaag
aggaacaagaaaatctttgacaattggatgactatccaggaacttttgacccacggtgct
aagtcgcctgacggcacgcgagtgtacaactccctcctgtctgtcaccacagtgtag
DBGET
integrated database retrieval system
