Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139371386
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Entry
139371386 CDS
T10872
Name
(RefSeq) phospholipid-transporting ATPase ABCA1 isoform X1
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla02010
ABC transporters
ocla04148
Efferocytosis
Brite
Transporters [BR:
ocla02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
139371386
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
DUF4162
AAA_23
Motif
Other DBs
NCBI-GeneID:
139371386
NCBI-ProteinID:
XP_070967899
LinkDB
All DBs
Position
1:16406586..16456167
Genome browser
AA seq
2350 aa
AA seq
DB search
MGIGTQLLLLLWKNITYRRRNKVQLIIELVWPLFLFLILISVRHSHPPYKQSQCHFPNKA
LPSAGTLPWVQGIICNINNPCFHNPTQGETPGRVGNFDNSILSRLLVDSQTILSYSGNQT
AFSGFQDLLDTIRRLGERPGAWPNLPVGEYLRANQTFSNFLLTNGSLSPSALDQLFRARL
NFQVVSLAGTGVMLKDIVCNATVLSQFLTVDQEDSMAELQSQLCAIPADTLQQAEQLFLS
QLDFSKFFTRDRLRANAGDLRVISQAVTSVSKELAVLMDDLSSLASFRELNSELRLLSPE
NRSTLPRESFRAFSRIMCGHPEVGGERIPSLNWYEDNDIKSFLGKNGTEDNNMDKDNVTT
PYCKSLIQSLESNPLSRIVWRGIKPLFIGKLLYTPDTPAVRNVMKEVNKTFQDLQVLEEL
NGAWMEVAPGIKTYMESSVEIQLLQDLLRRPEVAVLVNLQLENTSWTAKRIARFLSTPNE
PRKEGAPLTWLDVYSDLNNTITTLAQVTQCFSLNKLEGAATEGQMVDRALELLEEREFWA
GIVFLLPNTSLPGLPPHVTYKIRMDIDDVARTNKLKDRFWDPGPAADPFSDMRYIWGGFV
YVQDLVERAVARVLSGVEQSTGLYIQQMPYPCYVDDVFLRVLNRSLPLFMTLAWIYSVAM
IIKGVVYEKEARLKETMRIMGLGTGQLWVSWFISSLVPFLVSAGLLIALLKWGDILPYSN
PAVVFFFLTAFATATIMQCFLISTFFSRANLAAACGGLIYFALYLPYVLCVAWRDHLTTT
HRVLASLFSPVAFGFGCEYFSQYEEQGVGIQWFNLHSSPMEGDTYNFTTSIIMLHIDACI
YALATWYIEAVFPGEYGVPRLWNFVFSLNYWGGIPLEAGMPIPPAPRGQGGDRIEADPSH
LILGVAIRNLVKIYKQGAKLAVNHLNLKFYEGQITSFLGHNGAGKTTTMSILTGLFPPTA
GTVYIKGMDIRTDMDIIRKTLGVCPQHNVLFDILTVEEHVWFYGRLKGLSGDEVRKELDT
LLEDVGLLHKRHEQTRNLSGGMQRKLSVAIAFVGGSKVVVLDEPTAGVDPYSRRGIWDLL
LKYRKDRTIILSTHYMDEADLLGDRIAIISQGKLCCCGSPLFLKAKLGTGYYLTVVKKEG
LDTRTPSSASATKLPLATKDSDSSMSDDTGLGSDVSGSDLAALLTLAQRHIPGARLVEDV
GREAVINLPQKSAEDSSLAIFLTELDRRQADLGITSYGLSDTTLEEIFLRVAEETGVDVD
PEDSPGQADTPHGQGQGQGLSGEPFDDPGRKRLRKQEPQETDLLSGDDHGGVPLTGWGLT
WQQLRALFIKRWLYALRSRRGFFAQIVLPAVFVLIALLFSLIVPPFGKYPSLQLQPWMYG
EQYTFFSNDAPGDPAIQNLLDALLDRPGFGTKCMENSTDPQCLQEEEGMFMRPQILYSTW
QLFNRGNWTADKPSPDCECSSEEVRRMLPDCPEGAGGIPPPQVQRLTGDILQNMTGRNIS
DYLVKTYPQIMKKSLTSATKKWINEFRYGGFSLGGRGTQAVPQAYQMEDSVMSIRSRYKV
AQNSSLDQLLGRLPEFLGGLNSQNNVKVWYNNKGWHAMASFVNVMNNGLLRASLPPGPER
MKYGITAYNHPLNLTKEQLTEIAMMTTSVDVLVSICVIFSMSFVPASFVLFLIEERVSKA
KHLQFVSGVRPILYWLANFTWDMLNYTVPATMVVLIFICFQQQSYVSETNLPALVLLLLL
YGWSITPLMYPASFLFSVPSTAYVVLTSINLFIGINGSIATFVLELFVDQHLNDINKILK
KVFLIFPHFCLGRGLIDMAKNQAMLDAFQRLGAKQTLDPLEWDFVGKNLFAMAVEGVVFF
LFTILLQYKFFVNCRPCSEPELPPLGPEDEDIARERERVKSGKAQADILTMMDLSKVYKA
GKKPAVDRLCLGIPRGECFGLLGVNGAGKTSTFRMLTGDTAITYGEAFLSHHSVLTEMER
VHQLMGYCPQFDAICDLLTGREHLEFYARLRGVPEESVAKVAQWGVKKLGLTQYAEREAG
GYSGGNKRKLSTAISLIGAPPVIFLDEPTTGMDPKAKRFLWNCILSVIKEGRAVVLTSHS
MEECEALCTRMAIMVNGRFQCLGSVQHLKNRFGDGYTIVLRLSGTKPPEDPCTVDTYIKG
SFPGIELKERHQNVLQYQLPSHSCSLARVFDVLSNNHEELGIADYSVSQTTLDQVFVNFA
KEQSDDNLLREVTVNGGTPAPQPRRAAQPTQPGQTAKPAQTTKPPQSVKSSDGRPRETKP
NGVPDSGMAMTSRPQEKPQSSRGESRRELSSRRSSKESSANGSKGTRETSGSKDPTSLFL
VGSSTQDSSV
NT seq
7053 nt
NT seq
+upstream
nt +downstream
nt
atggggatcgggactcagctcttgctcctgctctggaagaacatcacttaccgcaggagg
aacaaggtccagttgattatcgagctggtctggcctctgttcctcttcctcatcctcatc
tcagtgcgtcactctcatcctccctacaaacagagccaatgtcatttccccaacaaggca
cttccctcagcaggcactctgccatgggttcaggggatcatctgcaacatcaacaacccc
tgtttccacaaccccactcaaggggagaccccaggacgggtgggcaactttgacaactcc
atactctctcgactcttagtggactcccagacaatcctgtcctacagtggcaaccagaca
gccttctctggctttcaggaccttctagatactatacggagacttggagagaggccaggc
gcctggccaaatcttcctgtgggagaatacctgcgagccaatcagaccttctccaacttt
ctcctgaccaatggcagcctgtctccctctgccctagaccagctgttcagggctcgcctg
aactttcaggtggtgtctctggcaggcactggggtgatgctgaaggacattgtgtgcaat
gccactgtgctgagccagttcctcactgtagatcaagaggattctatggcagaactgcag
agccagctctgtgccatcccagccgacaccctgcagcaagcagagcagctcttcctctcc
cagttggacttcagcaagttcttcacgagagacagactgagggccaacgccggtgacctc
cgggtcatcagtcaagcggtcacctccgtgtccaaggagttggcagtactcatggatgac
ctgtcctctcttgctagctttagggagttgaactcggagctgcgtctgctctcgccagag
aaccgttcgaccctgccgcgggagagcttcagggccttctccaggattatgtgtggccac
cctgaggtgggcggcgagaggatcccttcactcaactggtacgaggacaatgacatcaag
tcattcctgggcaagaacggcactgaggacaacaacatggacaaggacaacgtcaccacc
ccgtactgtaaaagcttgatccagagcctggagtccaacccactgtctcgcatcgtgtgg
agaggtatcaagcctctgttcattggcaaactgctgtacacaccggacacccctgccgta
cgcaacgtcatgaaagaggtgaacaagaccttccaggacctgcaggtcctagaggagctg
aatggtgcctggatggaggtggcacctggtatcaagacctacatggagagtagtgtggag
atacagctgctgcaggatctgctgaggcgaccggaggtggccgtgttggttaatctgcag
ctggagaacacttcctggacagccaagcgcattgcccgcttcctgtccacgcccaatgaa
cccaggaaagaaggagcgccccttacctggctggacgtgtactccgacctgaacaacacc
atcaccactctggctcaagttacccagtgtttctccctgaacaagctggagggtgctgcc
acagagggacagatggttgacagggccttggagctgctggaggagagagagttctgggct
gggatagtgttcctccttcccaacacgtctttacccggtcttccccctcatgtcacctac
aagatccgcatggacatcgacgatgttgctcgcaccaacaagctcaaggacaggttctgg
gacccgggcccagcagcggaccccttcagtgacatgcgctacatctggggtggctttgtg
tacgtacaggacctggtggagagagctgtggcccgtgtgctgagtggtgtggagcagtcc
actggcctctacatccagcagatgccctacccctgctacgtggatgacgttttcctacgc
gtgctgaaccgctcgctgcccctgttcatgacgctggcgtggatctactcggtggccatg
atcatcaagggcgtggtgtatgaaaaggaggcgcggctcaaggagaccatgaggatcatg
gggcttggtacaggccagctgtgggtcagctggttcatcagcagcctggtgcccttcctg
gtcagcgccggcctcctcattgctctgctcaagtggggggacatcctgccctacagcaac
ccggctgtggtgttcttcttcctgacggccttcgctacggccaccatcatgcagtgtttc
ctcatcagcaccttcttctcccgggccaacctggcagccgcctgcggaggcctcatctac
ttcgccctctacctgccctatgtgctgtgtgtggcctggagagaccacctcaccaccaca
caccgtgtcctagcaagcctgttttctcctgtggcctttggctttggctgtgagtatttc
tcccagtacgaggaacaaggagtgggcatccagtggttcaacctgcactccagccccatg
gagggagacacctacaatttcaccacttccataatcatgttgcatatcgatgcatgtatc
tacgctctggccacctggtacattgaagctgttttcccaggtgaatatggggtccccagg
ctatggaacttcgtgttcagtttgaactattggggaggaattcctctagaggccggcatg
cccatccctccggctcccagaggacagggaggagatcgcatcgaagccgacccctctcac
ctcatactcggtgtggccatccgcaacctggtcaaaatctacaaacaaggtgccaagctg
gcggtcaaccacctcaatctcaagttctatgaagggcagatcacctctttccttgggcac
aacggtgctggcaaaacaaccaccatgtctatcctgacgggtctatttccccccacggct
gggactgtgtacattaagggcatggacatccgaactgacatggacatcatcaggaagacc
ttgggagtgtgtcctcagcacaatgtcctttttgacattctgaccgtagaggagcatgtg
tggttctatggtcgtctgaagggcctatcaggcgatgaggtgaggaaggagttggacact
ctcctggaggatgtgggcctgctgcacaaacgccacgaacagaccaggaacctgtctggt
ggtatgcagaggaagctgtcggtggccatagcatttgtggggggttcgaaggttgtggtc
ctggatgagcccacagctggggtggacccctactcccgtcgaggcatttgggacctgctg
ctcaagtaccgcaaagatcgcaccatcatcctctccacccactacatggatgaggctgac
cttctcggagaccgcatagccatcatctcccaagggaagctgtgctgctgcggctccccc
ctcttcctcaaggccaagctggggacgggctactacctcaccgtcgtcaagaaggaggga
ctggatactcgaacccccagtagtgccagcgctaccaaactgccccttgccacaaaggac
agtgactcctccatgagtgacgacacaggtctgggcagtgatgttagtggctcagacctg
gctgccctgttgaccctggcgcagcgtcacatccccggggcgcggctggtggaggacgtg
ggccgtgaggcggtcatcaacctgccccagaagtcggcagaggacagcagtctggccatc
ttcctcacagagcttgacaggaggcaggctgatctgggcatcaccagctacggcctgtct
gacaccaccctggaggagatctttctgagagtggctgaggagacaggggtggacgtggac
ccagaggacagcccaggacaagctgacacaccccatgggcagggtcaaggacagggcttg
tctggagagccatttgatgatccaggaagaaaacggcttcgcaagcaagagccccaggag
acagacctgctgagtggggatgaccatggcggtgtccctctgaccggttggggtttgacg
tggcagcagctccgtgctctcttcatcaagaggtggctgtatgccctccgcagtcgcagg
ggcttcttcgctcagatcgtgctgcctgctgtgtttgtgttgatcgctctccttttcagc
ctcatcgtccctccgttcggaaagtacccctcgctccagctacagccctggatgtacggg
gaacagtacaccttcttcagcaacgatgcccctggggatcctgccattcagaatctgctg
gatgcccttctggaccggcctggatttggaaccaagtgcatggaaaacagcacggatcct
cagtgtttgcaggaggaggaaggcatgttcatgaggccccagattctctactccacctgg
cagctcttcaacaggggcaactggactgcagacaagccatctcctgactgtgagtgcagc
tctgaggaggtccgcaggatgctaccagactgccctgaaggagccggaggcatcccccct
ccacaggtccagagattgacaggggatatcctgcagaatatgaccggccgcaatatctcg
gactacctggtcaagacttaccctcagataatgaagaaaagtctaacttcagccactaag
aagtggatcaacgaattcagatatgggggcttctctctggggggcagaggtactcaggct
gtcccacaggcctaccaaatggaggactcagtcatgtctatacggtcacgttacaaagtg
gcacagaatagctcattggatcagctcctgggtcgcctaccagagtttctgggtggactg
aatagtcagaacaatgttaaggtgtggtataacaacaagggttggcacgccatggcatcg
tttgtcaatgtcatgaacaatggcctgctccgtgccagcctgcccccagggccagagcga
atgaagtatggcataaccgcctacaaccaccctctcaacctcaccaaggaacagctcact
gaaattgccatgatgaccacctcagtagatgttctggtgtccatctgtgtgatcttctcc
atgtcctttgtgccggccagctttgtgctgtttctcatcgaggagagggtcagcaaagcc
aagcaccttcagtttgtcagcggagtccggcccattctctactggctggctaacttcacc
tgggacatgctgaactatacagtcccggccactatggtggtcctcatcttcatttgcttc
cagcaacagtcctatgtgtctgaaaccaacctccctgctctggtcctgttgctcttgctt
tatggctggtctatcactcctctcatgtatccagcctccttcctgttcagtgtccccagc
actgcttatgttgtcctcacctcaatcaacctcttcatcggcatcaacggcagcatagcc
acctttgtcttggagctgttcgtagatcagcacttgaacgatatcaacaagatcctaaag
aaagtcttcctgatcttcccccacttctgtctgggtcgaggcctcatcgacatggctaag
aaccaggctatgttggacgctttccagagactgggcgcaaagcagaccctggaccccctg
gaatgggactttgtggggaagaacttgtttgccatggctgtggagggtgtcgtgttcttt
ctcttcacaatactgctacagtacaagttctttgtcaactgcaggccctgctctgagcct
gagttgcctcctcttggcccggaggatgaggacatcgccagggagagagagagagtgaag
agtgggaaagcccaagccgatatactcaccatgatggacctgagtaaggtgtacaaagct
ggcaagaagccagcagtagatcgtctgtgtctgggtattcctcgtggtgagtgctttggc
ctgctgggggtaaatggggctgggaagacctccacgtttcgcatgctgactggagacact
gcgatcacctatggagaagcatttctcagtcatcacagtgtgttgacggagatggagcgg
gtccaccagctgatgggctactgcccccagtttgatgccatctgcgacctgctgactggc
agggagcacctggagttctacgctaggctccgaggggtgccagaggagtctgtggctaag
gtggctcaatggggagtgaagaagctggggctgacccagtatgcagagcgagaggccgga
ggctacagtggaggcaacaaacgcaaactctccactgctatctccctgatcggagctccc
cctgttatattcctggatgagcccaccactggcatggaccccaaggccaagagattcctg
tggaactgcatcctgagtgtcatcaaggagggaagggccgttgttctcacctcccacagt
atggaggaatgtgaagctctctgcacacgaatggccatcatggtgaacggaaggttccag
tgtctgggctccgttcaacatcttaagaacaggttcggggacggctacacgatcgtcctg
cgcctgtcggggaccaagcctcccgaggatccgtgcacagtggacacctacatcaagggc
tccttcccgggcatcgagctaaaggagaggcaccagaatgtgctgcagtaccagctgccc
tcccactcctgctccttggcgcgggtcttcgatgtgctttccaacaaccacgaggagctg
ggcatcgccgactactcagtgtcacagaccaccctggaccaggtgtttgtcaactttgcc
aaagagcagagcgatgacaacctgctgagggaagtgacagtcaacggagggacaccagca
cctcaacccagaagagcggcccagcccacccaaccagggcagacagccaaaccagctcaa
acaaccaagcctccccagtctgtcaagtcctcagacggcagacccagagagaccaagcca
aatggggtcccagacagtggcatggcgatgaccagcaggccacaggagaagccccagtcg
agcaggggagagagcaggagagagttgagtagtcggaggtcaagcaaggaatcgtctgcc
aacggatccaagggcacaagggagacttcaggcagtaaggatccgaccagtctgttccta
gtgggtagcagcacacaagacagcagtgtgtaa
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integrated database retrieval system
