Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139371427
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Entry
139371427 CDS
T10872
Name
(RefSeq) methionine--tRNA ligase, cytoplasmic isoform X1
KO
K01874
methionyl-tRNA synthetase [EC:
6.1.1.10
]
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla00450
Selenocompound metabolism
ocla00970
Aminoacyl-tRNA biosynthesis
ocla01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09100 Metabolism
09106 Metabolism of other amino acids
00450 Selenocompound metabolism
139371427
09120 Genetic Information Processing
09122 Translation
00970 Aminoacyl-tRNA biosynthesis
139371427
09180 Brite Hierarchies
09181 Protein families: metabolism
01007 Amino acid related enzymes [BR:
ocla01007
]
139371427
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ocla03016
]
139371427
Enzymes [BR:
ocla01000
]
6. Ligases
6.1 Forming carbon-oxygen bonds
6.1.1 Ligases forming aminoacyl-tRNA and related compounds
6.1.1.10 methionine---tRNA ligase
139371427
Amino acid related enzymes [BR:
ocla01007
]
Aminoacyl-tRNA synthetase
Class I (U)
139371427
Transfer RNA biogenesis [BR:
ocla03016
]
Eukaryotic type
Aminoacyl-tRNA synthetases (AARSs)
Multi-aminoacyl-tRNA synthetase complex (MSC)
139371427
Prokaryotic type
Other AARSs
139371427
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA-synt_1g
WHEP-TRS
GST_N_5
Anticodon_3
tRNA-synt_1
GST_N_3
Anticodon_1
tRNA-synt_1e
Tom37
Motif
Other DBs
NCBI-GeneID:
139371427
NCBI-ProteinID:
XP_070967936
LinkDB
All DBs
Position
17:76426531..76480330
Genome browser
AA seq
1102 aa
AA seq
DB search
MKLFVSDGNPHCVKVIAVLEFTGVKCDVKHVNHEERVVPYLSRPALPALLLPSGTHLFSP
NSICQYLIELNGQESSDIVNQWLEWEATELQPAVMQALHMVVLQGKGAETPRVLQGPLSY
LDQSLSQRTTLFLTAEMVSVADVVLWAALYPILSDSSLVSGNQTLQLWFERVGMLAACVS
AAQTVLQGKGLKAESLKTYLQRQPTTHHGQGQVQGRGTQPCNSPEGGDDDDCVLSEEEIQ
SAAVTWGKGLADLPMVPERQHPILPQEGKRNVLVTSALPYVNNVPHLGNIIGCVLSADVF
ARYGRLRGWNVLYVCGTDEYGTATENKAREEGLTAQQICDKYHAVHASIYQWFQVDFDFF
GRTTTKKQTEIAQNIFWRLHERGFLLEDIVEQLRCEACQRFLADRFVEGTCPFCSYPEAR
GDQCDKCGKLINAVELREPTCKVCSQTPVVQSSKHLFLDLPKLEAELEQWLERSTGSGDW
TANAKQITRSWVRDGLKPRCITRDLKWGTPVPHPDFSDKVFYVWFDAPIGYLSITANYTD
QWEKWWKNPQQVELYNFMAKDNVPFHSVVFPCSLLGAQDNYTLVNHLVATEYLNYEDTKF
SKSRGVGVFGDMAKDTGIPSDVWRFYLLYLRPEGQDSAFSWVDMATKNNSELLNNLGNFI
NRAGMFVSKFFESCVPAMALQQEDKRLLAQVGWELKQYINLMDRVKIRDALKCILNISRH
GNQYIQVNEPWKKIKGDETDRQRSGTVTGVSVNVACLLSVMLQPYMPTVSHTIRQQLNAP
PSVTGTLLQGTGNFVCSLPAGHHIGTVSPLFQKLESEQIESLKKRFGGQQPEEEEEAKPK
PKTTAQPDVNAQPATTPASGLAAQTAVNGADAERARELTLAVAEQGEKVRTLKGQKAEKT
VIGAEVTKLLELKKQLSLAEGKDPEPVLTKGKKNAQPATTPASDPAAQTAVNGADSERAR
ELTLAVAEQGEKVRTLKGQKAEKTVIGAEVTKLLELKKQLSLAEGKDPEPVLTKGKKNAQ
PATTPASDPAAQTAVNGADSERARELTLAVAEQGEKVRTLKGQKAEKTVIGAEVTKLLEL
KKQLSLAEGKDPEPGLTKGKKK
NT seq
3309 nt
NT seq
+upstream
nt +downstream
nt
atgaaactattcgtgagtgacggaaatccgcactgtgttaaagtgatagcagtgctcgaa
tttacgggagtcaaatgtgacgttaaacatgtcaaccacgaagagcgagtggtgccctac
ctcagccgtccagccctgcctgccctgctcctccccagtggaacacacctcttcagcccc
aactccatctgccagtacctgatagagctgaatggacaggaatccagtgatatcgtcaac
cagtggctggaatgggaagctacagaactacagcctgcagtgatgcaggcccttcacatg
gtggtgctgcagggaaaaggagcagaaacccccagggttctacagggacctcttagctac
ctggaccagagtctgagccagaggaccacgctgttcctcactgctgagatggtttctgtg
gcagatgtggttctgtgggcagctctctaccctatcctgtctgacagcagtctggtatca
ggtaatcagacgctgcagctgtggtttgagcgtgtgggcatgttggcagcctgtgtgtcc
gcagcccagactgtacttcaggggaagggactgaaggcggagtctctgaagacctacctg
cagagacagccaaccacacaccatggtcagggacaggttcagggtagaggcacacagcca
tgcaacagccctgagggtggtgatgatgatgattgtgtgctgtcagaggaagagatccag
tctgccgccgtcacctggggtaaaggacttgcagacttacccatggttccagagagacaa
caccctattcttcctcaggagggcaagaggaacgtcctagtgaccagtgccttgccttat
gttaacaacgtccctcatctgggcaacatcatcggctgtgtgctcagcgctgacgtcttt
gccaggtatggtcgtctgcgtggttggaatgtactgtatgtgtgtgggactgatgagtac
ggcacagctacagagaacaaggcccgtgaggaaggtctgacagcgcagcagatctgtgac
aagtaccatgctgtccacgcctccatctaccagtggttccaggtggacttcgacttcttt
ggccgtaccaccacaaagaaacagactgagatagcccagaacatcttctggcgtctccat
gagcgaggcttcctacttgaagacattgtggagcagctgcgctgcgaggcgtgccagcgt
tttctagccgaccgcttcgtcgagggaacatgtcccttctgctcttacccagaggcccga
ggggaccagtgtgacaagtgtggcaagcttatcaacgctgtggagctacgggagcctact
tgtaaggtgtgtagtcagactcctgtagtccaatcatccaaacacctgttcctggacctg
cccaagttggaggctgagttggagcagtggttggagaggtctactgggtcaggggactgg
acggccaatgccaaacagatcaccagatcctgggtgagggacggactcaaaccccgctgc
atcaccagagacctgaagtggggaacccctgtacctcaccccgacttctctgacaaggtg
ttctacgtgtggtttgacgctcctattggttacctgtccatcacagccaactacactgac
caatgggagaagtggtggaagaacccacagcaggtggagctgtataacttcatggccaag
gacaatgttccgttccacagtgtggtgttcccctgctctctactgggagcacaggacaac
tatacactggtcaaccacctggtggctacagagtacctgaactacgaggacaccaagttc
tctaagagtcgaggtgttggtgtgtttggtgacatggccaaggatacgggcatcccctct
gacgtgtggcgattctacctgctgtacctccgtcccgagggacaggactcggccttctcc
tgggtcgacatggccaccaagaacaactctgagctgctcaataacctgggcaacttcatc
aacagggctggtatgtttgtcagtaagttctttgagagctgtgtccctgccatggctctt
cagcaggaggacaagagactgttggctcaggtgggatgggagctgaagcagtacattaac
ctcatggacagagtcaagatccgggatgccctgaagtgtatcctcaacatctctcgccac
ggtaaccagtacatccaggtcaacgaaccctggaagaaaattaaaggagacgaaacagac
aggcagcgatcgggtacagtgacaggtgtgtctgtgaatgtggcgtgcctgctgtccgtc
atgctccagccctacatgccaacggtcagtcacaccatccgccagcagctgaacgctccg
ccctccgttaccgggaccctgctgcagggcacggggaacttcgtctgctctctgcccgcc
gggcatcacattggcacggtcagcccgttgttccagaaactagagtctgaacagatcgag
tctctgaagaagaggtttggaggacagcagccagaggaggaggaagaagccaaaccgaag
ccaaagacgacagcccagcctgatgtcaacgcccagcctgctacaaccccagcttcaggt
ctggctgctcagactgcagtgaacggtgcagacgctgagagagccagggagttaacactg
gctgtggcagaacagggcgagaaggtccggaccctgaagggccagaaggcagagaaaact
gtgattggagcagaggtcaccaaactactggaactgaagaaacagctgtccctggctgag
ggaaaggacccagaaccagtgctgacaaaagggaagaagaacgcccagcctgccacaacc
ccagcttcagatccggctgctcagactgcagtgaacggtgcagactctgagagagccagg
gagttaacactggctgtggcagaacagggcgagaaggtccggaccctgaagggccagaag
gcagagaaaactgtgattggagcagaggtcaccaaactactggaactgaagaaacagctg
tccctggctgagggaaaggacccagaaccagtcctgacaaaagggaagaagaacgcccag
cctgccacaaccccagcttcagatccggctgctcagactgcagtgaacggtgcagactct
gagagagccagggagttaacactggctgtggcagaacagggggagaaggtccggaccctg
aagggccagaaggcagagaaaactgtgattggagcagaggtcaccaaactactggaactg
aagaaacagctgtccctggctgagggaaaggacccagaaccagggctgacaaaaggcaag
aagaagtga
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