Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139371439
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Entry
139371439 CDS
T10872
Name
(RefSeq) enhancer of mRNA-decapping protein 4-like isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
139371439
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ocla03019
]
139371439
Messenger RNA biogenesis [BR:
ocla03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
139371439
mRNA degradation factors
5'-3' decay
Decapping complex
139371439
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WD40_Prp19
Beta-prop_EDC4L
Pdc1_Ge1
WDR55
NBCH_WD40
Motif
Other DBs
NCBI-GeneID:
139371439
NCBI-ProteinID:
XP_070967959
LinkDB
All DBs
Position
2:63103108..63149287
Genome browser
AA seq
1424 aa
AA seq
DB search
MASNSNIDIEGATQHLRDILKLDRPGNSVDASPSENQSKTSFNGELNGLLGADLIGAGDR
STMAESTGPNSENMNTQECQIICLSGDDGSTCIPITSNNVEIVASRDSSIDSKARGSNKV
KIQPVAKYDWEHKYYYGNLIAVSNAYLAYAIRGANNQAMIRVLSLGSAERTLLKGFTGAV
TDLAFAHLDSTLLGCVDEAGNLVIWQLTCHSSKILDQVIVHVRRPEDTPLNSNRRLIWCP
FILEDNEENPEDASQTLALLHEDRAEVWDLEILRSNNGTWPVDATDLKDGVITIKGHTDR
ISEGALSPDGTVLATASHDGYVKFWQIYIEGQDQPSPLPGFFHRCLHEWQPHNGNPLSCL
LFCDNHKKQDPDVPFWRFLITGADQNQELKMWCTVSWTCLQTIRFSPDPFNSSVLPCLKA
SLDLSAECLILSDVQRKVLYVMELLQDQEKGRASFTAVSEFLLTHPVLSFGVQDVSHSRL
CHTEVLPPDEESESMTADGNQGTMESKAGIQIKLYCVHTKSLQDVQIWFQPNLGSGSSLF
LPHSNSNNGFGFSDHLTDMSVEGLSSDKESGCGSENDLCKIPALADFLSPSGTAAMPKLM
TPDAFMTPSASVPASPGSSASSLTIVTAMSSNSDSGASDGNVCRGGEELTQSPKMSVESN
SILIAGLGDNMPMYHLPQETTPHTLMFPLTYPLRPLQGLPSPNPPLSLDPQVIEPMLIQQ
ASPTRARSPDVISSASTAMSQDIPEIASETLQRGLGGVSGAESRETLPALHTDSMASAAS
ALHLLSPRNRNSSDHGHLPLELGAVVGAVEAEQRLSNTPSLLENALSKENAAAAASCSDN
NVSHPWPAAPDITRETRNSLRDNGLGDCSREEIKDRHMSSPYHRRTYHLTQNDSQDASAE
QSDHDDEVASLESSSGNCGARSSQRLPVKEWKSSPRGSPKLKRKSKKDDGDASHASQSRQ
PEQHHQQMNPEVLEELLILLRNQQREIAELHQSQLELLQRVTGHMDAVQSSVIAHVEHVM
VSQQEHEQRRMERILAEGHTRNQQLQEHLSQQLGQTLSNTLCNRLDKTLREEMKKTVPPT
ITKSLEPVTAQMSNTIAAKLTAVEAALKENISKVVKSKNTTDAIGRAAAEAMQGPIQAAY
KDAFQGIVLPVFERGCQSMFQQINESFKQGTHEYIQQLETHVKNKKQHEQEARDPMIGQL
QQMIDTFQNSTDQLATTITASVRSEVQHQLHMTVGNLQDSILTQVQRIVKGEVSMAMKEQ
QAAVNSSIMQAMRSAAGTPVPTAHLDYQAQQASILQLLQQGQLNQAFQQALSASDLNLVL
YVCETIDSQQVFGQHPCPLIQPVLLSLIQQLSTNLATRSELKISYLEDAVMNLDHGDPVT
RDHMSAVLSQVRQKLFQFLQSDPHSPLSKRARRLVMMLQGLVNH
NT seq
4275 nt
NT seq
+upstream
nt +downstream
nt
atggcttcaaattcaaacatagatatagagggtgcaacccagcatcttcgtgatatatta
aagctggaccgacccgggaacagcgttgatgcttctccaagtgagaaccaaagcaaaaca
tctttcaatggtgaattgaatggacttctgggagcagaccttataggagcaggtgacagg
tcaaccatggctgaatccacaggccctaattcagagaacatgaacacccaagagtgtcag
atcatctgcctctctggggatgatggctccacttgcattcccatcacatctaacaatgtt
gaaattgtggccagtcgagactcaagcattgacagcaaggcccgtggcagcaacaaggta
aaaatccagcctgtcgccaagtacgactgggagcacaagtattactacggcaacctcatt
gcggtctctaacgcatacctggcatatgccatccgaggagcaaacaaccaggccatgatc
cgtgtgttgagcttgggctcggcagagcgcaccctgctgaagggcttcacgggtgcagtc
acagacctggccttcgcacacctggactccaccctgctgggatgtgttgacgaggccggt
aacctggtcatctggcagctcacctgccatagcagcaagatcctcgatcaagtcattgtc
cacgtccggaggcctgaggatacacctctgaactccaataggaggttgatctggtgtccc
ttcatcctagaggacaatgaagagaaccctgaggatgccagccagaccctggccctactg
catgaagacagagctgaagtgtgggatctggagatcctccgcagcaacaatggcacctgg
ccagtagatgccactgacctgaaggacggagttataaccataaaaggacatacagatcgc
atcagtgaaggtgccctgtctccggatggcacagtcttggccacagccagtcatgatgga
tatgtaaagttctggcaaatctacattgaaggacaggaccagccaagtcctctccccggc
ttcttccacagatgtctacacgagtggcagccccacaacgggaaccccctttcctgcctg
ctgttctgtgacaaccacaagaaacaggacccagatgttccattctggcgctttctgatt
actggagctgatcagaaccaggagttgaagatgtggtgcacagtgtcatggacctgcctg
cagaccatcaggttctctccagacccgttcaactcctcagtcctgccctgtctgaaggcc
agtctggacctgtctgcagaatgcctcatcctcagtgacgtacagagaaaggtgttgtat
gtgatggagttgttgcaggaccaggaaaaaggcagagccagcttcacagccgtgtcagag
tttctgctcacacaccctgtgcttagcttcggtgttcaggatgtcagccacagccgcctg
tgccacacggaggtcctcccgccagacgaggagagcgagagtatgactgcagatggcaac
cagggcacaatggaatccaaagctgggatccaaatcaagctatattgtgttcacacaaag
tcccttcaagatgtgcagatctggttccagccaaaccttggttctggctcatccttgttc
ctgcctcactcaaactcaaataatggctttggtttttcagatcacttgacagacatgagt
gtggaaggtttgagctctgataaggagtctggatgcggctccgaaaatgatctctgcaag
attcctgctcttgctgacttcctgtccccctccggcactgctgctatgcccaagctcatg
acccctgacgccttcatgacccccagtgcttcggtcccagcctccccaggcagcagtgcc
agcagcctgaccatagtgacagccatgagcagcaactctgacagtggcgccagtgatggt
aatgtctgcaggggaggagaggagctgacccagagccctaagatgtctgtggagagcaac
tccatcctcatcgcaggcttaggggacaacatgccgatgtaccatcttccacaagagacc
actcctcatacgctcatgttccccctcacctaccccctccgccctctacaggggcttccc
tctccaaacccgcccctctcgctggacccgcaggtcattgagcctatgctgattcagcag
gcctctcctacccgggcccgctctccggacgtcatctcgtctgcctccacggccatgtct
caggacatacctgagatcgcctctgagacgctgcagcgaggcctggggggggtgtctggc
gctgaatctcgagaaactctcccagccctccacacagacagcatggcttctgcagcctca
gctcttcacctcctctctccacgaaaccggaacagctctgaccatggccatctgcccctg
gagctgggtgctgtagtaggagcagtggaggcggaacagaggctcagtaacaccccctca
ctactggagaacgccctgtcaaaggagaatgctgctgccgctgcctcctgctcagacaac
aatgtgagccacccgtggcctgcagctcctgacatcacacgggaaacacgcaacagcctg
cgagacaatggcctgggagactgctcgagggaggaaattaaggacaggcacatgtcctct
ccataccacagacgcacctaccacttaacccagaatgacagtcaggacgccagtgcagaa
cagagtgaccatgacgatgaggtggccagtctagagtcgtcttcagggaactgtggagcc
aggtcgtctcaaagactgccagtgaaggagtggaagagctctcccagaggctcccctaaa
cttaagaggaagagtaaaaaagatgacggggatgcatctcatgcttctcagtccaggcag
cctgagcagcatcatcagcagatgaacccagaggtgctggaagaactcctgattttgctc
cgtaaccagcagagggagatagcggagctccatcagagtcagctggagctgcttcagaga
gtgacgggccacatggacgccgtgcagagctctgtcatagcccacgtagagcacgtcatg
gtcagccagcaggagcacgaacagaggagaatggagagaatcctagcagagggacacacc
cgtaaccagcagctccaggagcatctctcgcagcagctgggtcaaactctcagtaacacc
ctttgtaatcggctggacaagactctccgagaggagatgaagaagactgttcctcccact
atcaccaagagcctggagcctgtcactgcccaaatgagtaacaccattgctgctaagctg
acggctgtggaggcagcactgaaggagaacattagcaaagtcgtgaagtcaaagaacacc
acagatgctattggccgggcagctgcggaggcaatgcaggggcctatccaggctgcctac
aaggatgctttccagggcattgtgctgcctgtgtttgagagaggctgccagtctatgttc
cagcagatcaatgagagcttcaagcagggcacccatgagtatatccagcaactggagacc
catgtgaagaacaagaagcagcatgagcaggaagcacgggatcctatgattggccagctg
caacagatgattgacacgttccagaactcaacggatcagctggccaccaccatcacagca
agtgtccgctctgaggtccagcatcagctccacatgacggtgggaaatttgcaggactca
atcctgacccaggtgcagcgcattgtgaagggtgaggtgagtatggccatgaaggagcag
caggcagctgtgaactccagcatcatgcaggccatgcgctctgctgcaggcacgcctgtc
cccaccgcacacctggactaccaagcccagcaagccagcatcctgcagctgctgcagcag
ggacagctcaaccaggccttccaacaggccctgtcagcctctgacctgaacctggttctg
tatgtgtgcgagaccatcgactcccagcaggtgtttggccagcatccctgccccctcatc
cagccagtgctgctgtccctaatacagcagctgtccactaacctggccacacgctctgag
ctcaagatcagttacttggaggatgctgtgatgaacctggaccatggtgatccggtgacg
agggaccacatgagtgcggtgctgtcccaggtccgacagaagctgttccagttcctgcag
tcagacccacacagtcctctcagcaagagagcccggcgcctggtgatgatgcttcagggc
ctggtcaatcactag
DBGET
integrated database retrieval system
