Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139371446
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Entry
139371446 CDS
T10872
Name
(RefSeq) integrin alpha-7-like
KO
K06583
integrin alpha 7
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04510
Focal adhesion
ocla04512
ECM-receptor interaction
ocla04810
Regulation of actin cytoskeleton
ocla04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
139371446
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
139371446
09142 Cell motility
04820 Cytoskeleton in muscle cells
139371446
04810 Regulation of actin cytoskeleton
139371446
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ocla04147
]
139371446
04515 Cell adhesion molecules [BR:
ocla04515
]
139371446
Exosome [BR:
ocla04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
139371446
Cell adhesion molecules [BR:
ocla04515
]
Integrins
Integrin alpha subunits
139371446
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
Integrin_A_Ig_3
Integrin_A_Ig_1
Integrin_A_Ig_2
FG-GAP
FG-GAP_3
FG-GAP_2
CC2D2AN-C2
Motif
Other DBs
NCBI-GeneID:
139371446
NCBI-ProteinID:
XP_070967969
LinkDB
All DBs
Position
17:complement(77320091..77401733)
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AA seq
1117 aa
AA seq
DB search
MAPHVVHGVSLSQPWCLPFLLLLLSLYSLTSEGFNLDTSMTLIKDGEKGSFFGFSVALHQ
QLTPEPHSWILVGAPRDRGLGLMRRQRTGALYRCPITGKEFDCERVDIDGDVNLDRESKD
NQWLGVTVKSQGIGGKVVTCAHLYELRQRVGLPSETRDPIGRCYVLSEDLTERDDLDGGE
WKFCEGRPQGHEQFGFCQQGLSAAFTPDNNFIMFGAPGTYNWKGEMRVQLLNQTLLDLGF
YDDGPYEVADEKQLNAQLIPVPYHSYLGFSVDSANDITSRGELTFVAGAPRANHTGAVVL
LRKDNVYRLVPQHILWGEELGSSFGYSVATADLNNDGWTDLIVGAPNYFDRKTEIGGAVY
IFLNRFGNWEYAQPIRLNGTHDSMFGLTVNNVGDLDRDGYDDIAVGAPFDGDGKVFIYRG
SSSGIDTKPAQILEGVNEGVKRFGYSISGGLDIDGNLYPDLAVGSLGDKMVLYRSRPVIH
VTRDVSIEPQHYIDLEQHNCKGRDGVCVEVKVCFTYTAYPESYSPDITLVLLFEADTERR
KLGLPHRVSFLGRSAQDAEYTHTDEVELKGQRHPACRSATFQLHENIRDKLRPIALAITH
TIRPPMLSSDTNPEEQLPPVLGVATSNTLHSEVNFLRKGCGDDNICQSNLKLTYQFGTRP
ITSDLFTPLPKDDEEVSVFSLSDQRSVVLEVTVTNMPSEPLYPEKDGDDAHAAQLLVTLP
DTLSYSGFRGQQVVCQANQNGSQAECELGNPLKRDSILKFYIILGTSAITIETTELTVNL
LLATISEQPDLAPVTAVAKVVIELPLAVSGVARPHQLFFSGAVKGESAMETLDDVGSALE
FEFTVTNTGPSLQTLGSAFLNIMWPHELSNGKWLLYPTAFHFKGHPETHCRPHTSLNPRK
FSHSSPEDQPQATFRRKGRSHPEEEGHVMTKGSLGRTTPAVAASERRKSLKLDCLLGSAR
CVLFQCPLLSFSGSAVLKIQGRLWNSTFLEEFPSVSALELLVRANITVKSSIKHLVLRDA
AAQVPVMIYPEVGLTAQYWIPWWWILIAILAGILVLSLMVCILWKCGFFRRVQYEDQVPQ
YHAVKIPHQDLPQFHESQKAGVLHKKEWTTHWSDGTS
NT seq
3354 nt
NT seq
+upstream
nt +downstream
nt
atggcaccacatgtggtacatggagtctctctttcacagccctggtgtcttcctttcctt
ttgctccttctctccctgtattccctgacgtccgaagggttcaacctggatactagcatg
actctgatcaaggatggggagaaagggagcttttttggattttctgtagcacttcaccag
caactcaccccagaaccacacagttggatactggtgggggctccccgggacagaggactg
ggcctcatgcggagacagcgtactggcgccctgtaccgctgtccaatcaccggcaaggag
tttgactgcgagcgcgtggacatcgatggagatgtaaacctcgacagggagagcaaggac
aaccagtggctaggagtgacagtcaagagccaggggattggaggaaaggtggtgacctgt
gcccacctgtatgagctgcgtcagcgtgtgggcctgccgtctgagacacgggaccctatc
gggcgttgctatgtcctgagtgaggacctgacagagagggacgacttggacggaggggag
tggaagttctgtgaggggcgaccccagggacacgaacagtttggcttctgtcagcagggc
ctgtctgccgccttcacaccagacaacaacttcatcatgttcggcgctccaggaacgtac
aactggaaaggagagatgcgtgtccagctgctaaaccagacactgttggatcttggtttc
tatgacgacgggccttatgaggtggcggatgagaaacagctgaatgctcagctgatccca
gttccctaccatagttacctgggtttctcggtggactctgctaacgacataacgagccgt
ggggagctgaccttcgtggcgggggctccgcgagccaatcacacgggagcggtggtgcta
ctgcgtaaagataacgtgtaccgcctggtgccacagcacatcctgtggggagaggagctg
ggttcttccttcgggtactctgtggccacggctgatctcaacaatgatggctggacagac
ctgatagtgggagctcccaactattttgacaggaagacagagatcggaggtgctgtgtac
atcttcctcaaccgattcggtaactgggagtacgctcagccaatcaggctcaacggaact
catgactccatgtttggactgaccgtcaacaatgtgggagacctggaccgggacggatat
gacgacatcgctgtgggggctccgtttgatggagatgggaaagtgttcatctaccgaggc
tcgtcctcgggcatcgacaccaagcctgcacagatcctggaaggggtgaacgagggggtg
aaacggtttggctactccatctcaggcggcctggacatcgatgggaacctgtaccctgac
ctggcagtaggctctctcggcgataagatggttctgtacaggtctcgccccgttattcac
gtgacccgggatgtatccatcgaacctcagcactatattgacttggagcaacacaactgc
aaggggagagatggagtgtgtgtggaggtcaaagtgtgcttcacctatactgcatatcca
gagtcatactcaccagacatcaccctggttctactcttcgaggctgacaccgagcgcagg
aagctgggcctgccccaccgtgttagcttcctgggtcggagtgcacaggacgcggagtac
acacacactgatgaggtggagctgaagggtcaacgccatcccgcctgccggagcgccacc
ttccaactacacgagaatatccgtgacaagctgcgtcccatcgccctggccatcacccac
actatcagaccccccatgttgtcctcagacactaatccagaggaacaactgcctcccgta
ctgggtgttgccacctccaacaccctgcactctgaggtgaatttcctgaggaaaggctgt
ggtgatgataatatctgtcagagcaacctgaagttgacctaccagtttggaacccgacct
ataacctctgacctcttcacccctctgccaaaagatgatgaggaggtgtccgttttctct
ctgtctgaccagaggtccgtggtgttggaggtgaccgtcaccaacatgccctctgaacct
ctgtaccctgagaaggacggtgacgatgcccatgccgcccagctactggtgaccctgcca
gacaccctgtcctactctggcttcaggggacaacaggtggtgtgtcaggccaatcagaat
ggctctcaggcagagtgtgagctgggaaaccccctgaagagagattctatcctgaagttc
tacatcatcctcggcacctctgctatcaccatagagaccacggaactcactgtcaacctc
ctgctggctactatcagtgagcagccagacctggccccagtcacagctgtggctaaagtc
gtcatagagctccctctggctgtcagcggggtggcccggccacaccagctgttcttcagt
ggggctgtgaagggggagagcgctatggagactctggacgacgtgggcagcgctctggag
tttgagtttacggtgaccaacactgggccgtccctgcagactctaggctctgccttcctc
aacataatgtggcctcatgagctgtccaatgggaagtggctcctgtaccccaccgcgttt
cacttcaagggccatccagaaacccactgtagaccccacacctccctcaacccacggaag
ttctcccacagctctcctgaagaccagccacaggctacattcaggaggaaggggcgatcc
cacccggaagaggaggggcatgtgatgaccaagggcagtctgggtaggaccacgcccgct
gtggctgcctccgagagacggaagtcactcaaactggactgtctgctgggttcagcgcgc
tgcgtccttttccagtgtcctctcctcagcttctctggctctgctgtcctcaagatccag
ggacgtttgtggaacagtaccttcctggaggagttcccatcagtcagtgctctggagctg
ctggtaagagccaacatcacagtcaagtcgagcatcaaacacctggtgctgagggatgct
gccgcacaggtcccagtgatgatttacccagaggttggtctgactgcccagtactggatc
ccctggtggtggattctcatagccatcctggctggtatcctggtgttgtccctgatggtc
tgcatcctctggaagtgtggtttcttccgtcgggtccagtatgaagaccaagtgcctcag
taccatgcggtgaagattccccaccaggacctgccccagttccatgagagccagaaggca
ggggtcctccacaagaaagagtggactacacactggagcgacggaacctcctga
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