Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139371469
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Entry
139371469 CDS
T10872
Name
(RefSeq) stabilin-1 isoform X1
KO
K19020
stabilin-1
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04148
Efferocytosis
Brite
Glycosaminoglycan binding proteins [BR:
ocla00536
]
Hyaluronan
Cell surface receptors
139371469
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
139371469
NCBI-ProteinID:
XP_070968009
LinkDB
All DBs
Position
17:83656329..83956846
Genome browser
AA seq
2574 aa
AA seq
DB search
MLQSTGPTMLILLLTLGTMVTCSLQQAQSSMNRCDETGADQTTTPCTSCAASQTQLCPRG
FKKYTTQSMDTNMGQDGCQYSVTIAGQQVALNGCNHQCERTVTMPKCCADFWGPLCLSCP
SWNGRTCNWHGTCMDGISGNGSCVCNEGYTGFACQQCSNKNSYGDNCKSECGCVNGECNN
GPDGNGECYCQPPYTGPRCEQVSAACKNCSAYSHCKGVADNSLCQCLPGFHKTGDRCSGF
CSAKQCDVNADCSWLGGRLFQCQCKAGYKGDGRMCVPINPCDEDNGGCPRNSTVCVYNSP
GKSRCDCMHGWEGSTPSSGCTLKNVCNDTTCHPNAGCETGLDGYPRCLCNAQQIGDGYRC
YGNLMERLVELNREGTHKGKLSGAILLFVRDCRLTISQQGPFTAFVPLSSFIVPLAGVTD
ESVCQRYLVRGQYLYKSLDRTDVYTASGLQLRFKPNKQFMLVKSPETLYSVIQQDIPAAN
GVIHIIDQPIIPRNILPDSPKDEQFADKTIGEILTKDEKYNRFLSLVDNCGTTLPLRGPG
PLTVFVPTNDAVDKFRDGRLIYMLFHAQNKLQELLKQHIYSQAALTVDQLASMGLIQTMA
NQILLVNLTNDGLVLLGGKPLQITNIMASNGVIHMIDGVLVPPSIVPILPKRCDVTENKI
IVGPCVRCSYLYESHCPEGSIELHSHMKDCDYQAYPFNPTLNKGCAKYCNTTIERAECCS
GFYGPECKTCTGGFQTPCYGKGTCFDGIHGNGSCRCEERFKGIACHICSDPNKHGEKCDQ
DCRCLHGVCDNRPGSKGACRGGSCLEGYSGDYCDKEAKACNSDGLSEHCHVHAFCSFTGS
HTTCECMSGYEGDGHSCILVNPCLKADRGGCDVNAQCENSGPANVSCVCNEGWTGDGLIC
TEVDNCLLETRGGCHKDADCKSLGPGQSECTCMRGYMGDGTVCDLINPCQKNNGGCHSLA
KCKSADGENIICVCPEGYVGDGVTCYGTMLEELDMNTNLYGFYRLIQSSSEFDLSGNLTA
LVPSRDVIRNLTTTVQDFWFSRYRLPYLLKAHFLQGIFSIEDLDKQVHQRLPTLHLPTTW
EVKTVDGEVRIENATILTPNIPSINGYIHIINTVLFPPLSDIPPEPPGLMQFLNTTPTFS
LFTQAALLYNLTQEIGVYDYTLLLPHDAAVRDYLSQTNSTQLGEEVFKYHIILNEQLFPD
HLRDGMVKDTLLGRAYQIMFHLGKNNETLANDVLLDGSHSETRHGVILAVPQVLQVHKNR
CIKDVILRVRGRCTACDEKPRCYFNYKPTIREYPQNMRSNCKFRKRVGSRRKSVAGCIID
CLKTTQDHSCCPGYFGHYCFKCPGERDNWCSGNGRCKDGNLGTGECLCKEGFHGTACETC
EPGRYGKDCNSECSCAHGKCLDGVTGNGRCVCYKGWRGVNCSKEIVSDACGGICDGNANC
EPKETEGPRCQCVAGFTGNGTVCTEVNLCATGNGGCAQIANCTKTLPGERTCTCPEGYTG
DGVWCLEIDGCLVNNGGCSSIAECIKTGPNLVACNCLPGYSGNGHFCYPFNPCRTNNGGC
GKYARCRYMGNGERNCSCNGGHIGDGFDCRGKTRTEIFRQSEAALYRRIIMVSDVRSLYG
DGPFTTFIPPANSNFSIEAWESQGRSPDLANYHMVSCETLMLSDLKTTSKAVAVSGHQLT
FSLKDGSVYINDDARIVSSDYVTADGVIHYIDKVLTPYDLKDQKTIPSKLNFTEAGELYG
YMKFTKLVQDANMLNLVENSIHQPLTMLWPSDAALSSLSEERQHWLYSLAHRDKLTAIIK
AHIIRNIKKMTLTSFTTYRTMHGSTFTFSCNKKVVGDIMVNDNMARLLDRFMMFNGGVAY
GIDQLLEPPGLGAHCDGLEDRTIYSRCGSCLGPRPCPHGTEDTGKTEICSLINPYSMLYP
RHHSVMYNHDFSHYPSMTRHHMGQRMGCKRMCKSQAWVISCCKNHYGRDCQVCSGGLESP
CGDHGDCDDGRLGSGRCRCHDGFKGIACELCELKHYGTNCTACNCTNQGQCEEGMEGDGS
CSCTEGWTGDRCHLKIEKKLVCSPECHSNAVCQADNICLCQSQYVGDGLNCTAPDLCAEY
NGGCHQHAACLQTDLQVNCTCLSGYEGDGSVCSPINRCVTETNGGCSDFATCLFTGPNER
QCECLDGYVGNGLQCLEKVVPPIDRCLEENGGCHPQATCKDLHYHSNTAGVFHLRSSAGK
YQLNYTDAELACQAEGATLATFSQMADAQQLGMHQCVAGWIQGKKVGYPTRFPSVNCGDN
HVGIVLYKDPVDPSSKYDTFCYRLSDVSCVCGSGYVGNGDFCNGDLASVVATNLNYSVFY
NILLKYAGSSTEGEVLLDFLSSSSSYATLFVPVNAGFSENETLSDRDVEYHISTNNSITL
YEDLKHDGVIPSRLGYNLSVVISPSNITQQNQEPQTFKLVNRRLVLTWDIPAYNGIIHVI
EGPLRAPPLPVHHAQSSGHAHGGGTVATSILVTCLIVCVIAGLTYYVFKHKNDAFRFHYF
KNEEGDKPALVSIPNPLYSGYRAFNQPFGINEQCEEAEPAAAEPEEPVPRLLDL
NT seq
7725 nt
NT seq
+upstream
nt +downstream
nt
atgctgcagtcaacgggacccaccatgctgattctactactgacactgggaaccatggtg
acgtgtagtttacaacaggcacagagctctatgaatcgttgtgatgagaccggagccgac
cagaccactaccccctgtacgtcgtgtgctgcctcccagactcagctgtgtcccaggggc
ttcaagaagtacaccacccagtccatggataccaacatgggccaagatggttgccagtac
tcagtaaccatcgcagggcaacaggtggcgttgaatggctgcaaccaccaatgtgagagg
accgtcaccatgcccaaatgctgcgcagacttctggggtcctctgtgtctgtcctgtcct
agctggaatgggagaacctgtaactggcacggaacctgcatggatggaatatcagggaat
gggtcctgtgtctgcaatgagggatacacgggctttgcctgccagcagtgttccaacaag
aattcatacggagacaactgtaaatcagagtgcggctgtgtgaatggagagtgtaacaac
ggtcctgatgggaacggagagtgctactgccagccgccgtacactggacccaggtgtgaa
caagtctctgcagcctgtaagaactgcagtgcctactcccactgtaaaggagtggcagac
aactccctgtgtcaatgtcttcctgggtttcacaagactggagaccgttgctcaggtttt
tgttctgctaaacaatgtgatgtgaatgcggactgttcttggctgggggggcggctgttc
cagtgccagtgtaaggcaggttacaagggggatggtcggatgtgtgttcccatcaaccca
tgtgacgaggacaacggaggctgtcctcgcaattccactgtctgtgtctataatagccct
ggcaagtctagatgtgattgtatgcatggttgggagggctctaccccgtcctccggctgt
accctgaagaatgtatgtaatgacaccacctgccaccccaacgccggctgtgagaccggc
ctggacggataccccaggtgcttgtgcaacgcccaacagatcggcgatggctaccgttgt
tatggcaacctgatggaacggctagtggagctgaacagggaggggacacacaaggggaag
ctctctggagccatcttgctatttgtgagagactgtaggctgaccatcagccaacaggga
cctttcaccgctttcgtccctctttcgtccttcattgtgcctctagcaggcgtgaccgac
gagtctgtgtgtcaacgttacctggtgaggggtcagtacctgtataaaagcctggataga
accgacgtctatactgcaagtggactacaactcaggttcaagcccaataagcaattcatg
ttggtgaagtctcctgagactctctactcagtcatccagcaggacatcccagcagccaat
ggggttatccatatcattgaccagccaatcatacccaggaacatcctccctgacagccca
aaggacgagcagtttgctgataagaccatcggggagatcctgacaaaggatgagaaatac
aaccgcttcctctcgctggtggacaactgtgggactactctgcctctgagaggtcctggt
cctctcactgtgttcgtcccgaccaacgatgctgtggacaagttcagagacggcaggctg
atttatatgctgttccatgcccagaacaagcttcaagagctactgaaacaacatatctac
tcccaggctgcgttgaccgtggaccagctggcaagcatgggtctgattcagactatggcc
aatcagatcctactagtcaacctcaccaacgatggcctggtgctgctgggcgggaaacct
cttcagattactaatattatggcatccaatggagtgatccatatgattgacggggttcta
gtcccgccctcgatcgtccccatcctgcctaagagatgtgatgtcacagagaacaaaatc
attgtgggcccgtgtgtgaggtgcagctatctctatgagtcacattgccccgagggaagc
atagaactgcatagtcacatgaaggattgtgactatcaggcatatccattcaaccccacg
ctcaataaaggttgtgctaaatactgcaacactactattgagcgagcagagtgttgcagt
gggttctatggacctgagtgtaaaacgtgtacaggaggtttccagacaccctgttatggc
aaaggcacttgttttgatggtatccatggtaacgggtcgtgtcgctgcgaggagcgcttc
aaggggatcgcctgtcacatctgttccgaccccaacaaacacggagagaagtgtgaccag
gattgccgctgtctccatggtgtgtgtgataaccgcccaggcagtaagggtgcatgtaga
gggggctcctgcctggagggttactctggagactactgtgataaggaggctaaggcctgt
aactctgatggtctttctgaacactgccatgtccacgccttctgcagcttcaccggcagc
cacaccacgtgtgagtgtatgtcggggtatgaaggagatggacactcctgcatcctggtc
aacccctgcctgaaggctgacagaggaggctgtgatgttaacgcccagtgcgagaactca
gggccagctaacgtgtcatgtgtttgtaacgagggctggacaggagacggcctgatctgt
actgaggtggacaactgtctcctggagaccagaggtggctgccataaggatgcagactgc
aagtctctaggaccaggacagagtgagtgtacctgtatgaggggttacatgggagatggg
acagtctgtgatctcatcaacccttgtcagaaaaacaacggaggatgccattctctggct
aagtgtaagtcagcggatggagaaaacatcatctgtgtctgtccagaagggtacgttgga
gacggagtcacatgctacgggacgatgctagaggaactggacatgaataccaatctgtat
ggtttttaccgcctgatacagagttcgtcagagtttgacctgagtgggaatctaacggct
ctggtaccttccagggacgttatccgcaatctaaccacaactgtgcaggacttctggttt
agccgctacaggctcccataccttctaaaagcccacttcctccaggggatattctccata
gaggacctggacaagcaggtccaccagcggttacccactctacacttgcctactacatgg
gaggtcaaaactgttgatggggaagttaggatagagaatgcaaccatcctcacccccaac
atcccttctatcaacggatacatccacatcattaatacggttctgttcccccccttgtca
gacatcccaccagaacccccaggcctgatgcagttcctcaacaccacccctaccttcagt
ctctttacacaggcagcactgctctacaacctgacacaggagattggcgtctatgattat
acgctcctacttccacacgacgccgccgtccgagattacctgagccagaccaactctaca
caactgggtgaagaagtatttaaataccacatcattcttaatgaacagctgttcccggat
catctgagggatgggatggtgaaggacacattacttgggagggcctaccagatcatgttc
cacctgggcaagaacaatgagactttggccaatgatgttctgctggatgggagccacagt
gagacgagacacggggtgatcctggccgttccccaagtcttacaggtccataagaaccga
tgcattaaagacgtgatcctacgagtcagagggaggtgcacagcctgtgatgagaaaccc
agatgttacttcaactacaagccaaccattagggaataccctcagaacatgaggtctaac
tgcaagttcaggaagagggtgggatctaggaggaagtccgtggctggctgcattattgac
tgtttgaagacgacacaggaccactcgtgctgcccgggatactttggtcactactgtttt
aaatgccctggggagcgggacaactggtgctcagggaacggaaggtgtaaggatgggaac
cttgggactggggagtgtctttgtaaggagggtttccatgggacagcttgtgagacctgc
gaaccgggacgctacggcaaggactgcaactcagaatgcagctgtgctcatgggaagtgt
ctggatggagtgacaggaaacgggaggtgtgtctgctacaaaggctggagaggagtcaac
tgctccaaggagatcgtgtctgacgcctgtggcggaatctgtgatggaaatgcaaactgt
gagcccaaggagacagagggccctagatgccagtgtgttgcaggcttcacaggcaacgga
accgtctgcacagaggtgaacctgtgtgccactgggaacggaggctgcgctcagattgcc
aactgcaccaagacgttacctggggagaggacctgcacctgtccagaaggatacactgga
gacggggtgtggtgtctagagatagacggttgtttggtaaacaacggtggatgttccagt
atcgcagagtgcatcaaaacaggaccgaacttggttgcctgtaactgtttacctggctac
tctgggaatggacatttctgctacccgttcaacccctgtcggactaacaacgggggctgt
ggaaagtacgccaggtgtcgttatatgggcaacggagagaggaactgctcctgcaatgga
ggacacataggagatggctttgactgccgaggcaagacccgcacagagatatttcgccag
tcagaagctgcgttgtaccgtcggataataatggtgtctgatgtgaggagtctgtacggt
gatgggcccttcactacattcatacctcctgcaaacagcaacttctcaatagaggcatgg
gagtcacagggacgcagcccagacttggctaactaccacatggtgtcttgtgagactctg
atgctctctgacctgaagaccacctcaaaggctgtggccgtctccggacaccagctcacc
ttcagcctcaaggatggctctgtgtacattaatgatgacgctaggatagtctccagtgat
tatgtgacagctgacggtgtgatccactacattgacaaggtcctcaccccgtatgacctg
aaggatcaaaagaccataccatctaagcttaatttcactgaagcaggtgaactatatgga
tacatgaagttcaccaaactggtgcaggatgccaacatgctgaacctggtcgagaactcc
atccaccagcccctgaccatgttgtggccgtctgacgctgctctcagctctctgtctgaa
gagagacaacactggctctacagtcttgcccacagggacaaactcacagccatcatcaaa
gctcacatcatacgcaatatcaagaagatgaccttgacttcgttcactacctaccggacg
atgcacggatcaaccttcacctttagctgtaacaagaaagtcgttggggacatcatggtg
aatgacaacatggcgaggctcctggatcgtttcatgatgtttaacgggggcgttgcgtat
ggcatcgaccagctactggaacctcccggtctgggtgcacactgtgatggactggaggac
aggactatatacagtcgatgtggtagctgcttgggtccccgaccctgtccccacggaact
gaagatacgggcaagactgagatctgcagcctcatcaacccctactctatgctctaccct
cgacatcacagtgtgatgtataaccacgacttcagccactacccctctatgacgaggcac
cacatgggccaaaggatgggctgtaagaggatgtgtaagagtcaagcctgggtcattagc
tgctgtaagaaccactatggaagagattgccaagtatgttctggtgggttggagtctccc
tgtggagatcacggggactgtgatgatggccgtctggggtctggacgctgccggtgccac
gatggcttcaaaggaatagcctgtgagctgtgtgaacttaaacactatggaaccaattgt
acagcgtgtaactgcacaaatcagggccagtgtgaggaggggatggagggagatgggagc
tgctcctgtactgagggctggactggagaccgctgccaccttaaaatagagaagaagctg
gtgtgttctccagagtgccatagcaacgccgtgtgtcaggccgacaacatctgtctctgt
cagtcacagtatgtgggggacggcttgaactgcaccgctcctgatctgtgtgcggagtac
aacgggggctgccaccagcatgcagcctgtctccagacagacctgcaggtcaactgtaca
tgtctgtctggctacgagggtgacggctctgtctgctcacctatcaacaggtgtgtcaca
gagaccaacggaggatgcagtgacttcgctacttgcctgttcacagggcctaatgagcgt
cagtgcgagtgtcttgatgggtacgtggggaacgggctccagtgtctggagaaggtggtt
ccacccatcgaccgctgtctggaggagaacggaggatgtcacccccaggccacgtgcaag
gacctgcactaccacagtaacactgccggagtgttccacctgcgttccagtgcagggaag
taccagctgaactacaccgatgctgagctagcctgtcaagctgagggggctacgctggcc
accttctctcagatggctgatgcacaacagctgggaatgcaccaatgtgttgctggatgg
atacaagggaagaaagtgggctatccaaccaggtttccctcggtcaattgtggtgacaac
catgttggtatagtgctatacaaagaccctgtggaccccagcagcaaatacgacaccttc
tgttacagactgtcagatgtgtcctgtgtgtgtggaagtgggtacgtaggtaacggggac
ttctgtaacggagacctggccagtgttgtggctaccaacttaaactactctgtattctac
aatatattgttgaagtatgcaggctcgtctacagagggagaagttctgttggactttctg
tccagcagttcatcctatgccactctgtttgtgccagtcaacgctgggttctctgagaat
gagaccttatcagaccgggatgtggagtaccatatctccactaacaacagcattacgctc
tatgaggacctgaaacacgatggagtcatcccttccagactgggatataacctctcagtg
gtcatttcccccagcaacatcacacagcagaaccaggagccccagacgttcaagctagtg
aaccggaggctagtgttgacctgggacatcccagcctacaatggaattatccatgtcata
gagggcccactcagagccccgccactaccagtgcaccatgcccagtcatcaggccacgcc
cacgggggcgggactgtggccacctccatcctggtcacctgtctgatagtctgcgtcatc
gctggcctcacctattacgtcttcaaacacaagaatgacgccttccgcttccactacttc
aagaatgaagagggggataagcctgctctggtgtctattcccaacccgctctacagcggt
tacagggccttcaaccaaccctttggtatcaatgaacaatgtgaagaggcagaaccagca
gcagcagaaccagaagaaccagttcctcgactactggatttatga
DBGET
integrated database retrieval system
