Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139371985
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Entry
139371985 CDS
T10872
Name
(RefSeq) nuclear receptor ROR-alpha A isoform X1
KO
K08532
RAR-related orphan receptor alpha
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ocla03000
]
139371985
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
ocla03310
]
139371985
Transcription factors [BR:
ocla03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
139371985
Nuclear receptors [BR:
ocla03310
]
1. Thyroid hormone like
1F. RAR-related orphan receptor
139371985
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Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
Motif
Other DBs
NCBI-GeneID:
139371985
NCBI-ProteinID:
XP_070968075
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Position
2:complement(65333079..65621518)
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AA seq
526 aa
AA seq
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MESPPDPASDPGNSASEPATPARETPVNLETLRKADHPAPVRRQTCSSTNRGGLTNKQGI
SVTKKTHTSQIEIIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQSNAAYSCPRQKNCLI
DRTSRNRCQHCRLQKCLAVGMSRDAVKFGRMSKKQRDSLYAEVQKHRLQQAQRDHQQQPG
EAEPLTPTYGLSANGLTELHDDLSGYMDGHTPDGSKPDSAVSSFYLDIQPSPDQSGLDIN
GIKPEPICDFAPGSGFFPYCSFTNGETSPTVSMAELEHLAQNISKSHMETCQYLREELQQ
MTWQAFLQEEMESYQTKPREVMWQLCAIKITEAIQYVVEFAKRIDGFMELCQNDQIVLLK
AGSLEVVFVRMCRAFDSQNNTVYFDGKYAGPDVFKSLGCDDLISSVFEFGKNLCSMHLSE
DEIALFSAFVLMSADRSWLQEKVKVEKLQQKIQLALQHVLQKNHREDGILTKLICKVSTL
RALCSRHTEKLTAFKAIYPDIVRAHFPPLYKELFGSDFEQSMPVDG
NT seq
1581 nt
NT seq
+upstream
nt +downstream
nt
atggagtcccctccagatccagcaagcgacccgggcaacagcgcctctgagccggctaca
ccggccagggaaaccccggtaaacctagagacgctccgaaaagcggaccatccagcccct
gttcgaaggcagacctgttcaagtaccaacagaggtggactcacgaacaagcaaggtatt
tcagtaacaaagaagacacatacctctcaaatcgaaataattccctgcaagatctgtgga
gacaaatcatcaggcatccattacggtgtgataacatgtgagggctgtaagggcttcttc
aggaggagtcagcagagcaatgcggcttactcatgcccccgtcagaagaactgcctgatc
gaccgcaccagccgcaaccgctgccagcactgccggctgcagaaatgtctggcagtgggc
atgtcaagggacgcggtgaagtttgggcgcatgtcgaagaagcagcgggacagcctgtat
gcggaggtgcagaaacaccggctgcagcaggcgcagcgtgaccaccagcagcagcccggc
gaggccgagccactcacacccacctatggcctctcggccaatggcctcacagagctccac
gacgacctcagtggctacatggatggccacacccccgacggcagcaagcccgactcagca
gtcagcagcttctacctggacatccagccctcccctgaccagtccggcctggacatcaac
ggtatcaagcccgagcccatctgcgacttcgcccccggctcaggcttcttcccctactgc
tcctttaccaacggagagacatcccccactgtgtccatggctgagctagagcacctggcc
cagaacatctccaagtctcacatggagacgtgtcagtacctgagagaggagctgcagcag
atgacctggcaggccttcctgcaggaggagatggagagctaccagaccaagccccgagag
gtcatgtggcagctgtgtgctatcaaaatcacagaggccatccagtacgtggtggagttt
gccaagcggatcgacggcttcatggagctgtgtcagaacgatcagatagtgctgctgaaa
gcaggctctttggaggttgtgtttgtgagaatgtgccgtgccttcgactctcaaaacaac
acagtctatttcgatggaaagtatgctgggcctgatgtgtttaagtcattaggctgtgac
gacttgatcagctccgtcttcgagtttgggaagaacttgtgttctatgcacctgtctgag
gatgagattgccctgttctccgcgttcgtgttgatgtctgcagaccggtcctggctccag
gagaaggtgaaggtggagaaactccagcagaagatccagctggcactgcagcatgtcctg
cagaagaaccacagagaggacggcatactcaccaagttgatatgcaaggtgtcaacactg
cgagcgctgtgcagcaggcatacagagaagctgacggctttcaaagcaatatacccagac
attgtgcgtgcccacttcccccccttatataaggagctctttggatcggactttgagcag
tccatgcccgttgacgggtag
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