Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139372314
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Entry
139372314 CDS
T10872
Name
(RefSeq) glutamate receptor ionotropic, NMDA 2C-like
KO
K05212
glutamate receptor ionotropic, NMDA 2D
Organism
ocla
Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04020
Calcium signaling pathway
ocla04080
Neuroactive ligand-receptor interaction
ocla04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09130 Environmental Information Processing
09132 Signal transduction
04020 Calcium signaling pathway
139372314
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
139372314
04082 Neuroactive ligand signaling
139372314
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ocla04040
]
139372314
Ion channels [BR:
ocla04040
]
Ligand-gated channels
Glutamate (ionotropic)
139372314
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Lig_chan
Lig_chan-Glu_bd
ANF_receptor
SBP_bac_3
Motif
Other DBs
NCBI-GeneID:
139372314
NCBI-ProteinID:
XP_070968145
LinkDB
All DBs
Position
18:37574197..37624456
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AA seq
2096 aa
AA seq
DB search
MFRVASENNIDVYTDTGTEFIRKCIRDVVPTTLKRVNPSKAAGPDGIPSRVLRACTGLLV
GVFMDILNLSLSQSAFPTCFKMSTIVPVPKKAKAANNALLYQGKTIRLQYESLGEYESPG
EYESPGEYESLGEYESPGEYESPGEYESLGEYESPGESFFACELPPSLLCPPNCAPPPLP
HMAAKPALSLLLAVLACTGPARSSPPLLLRPRERERDLGVVNIAVVHSGSSLLPETAAAG
GTGATNGPGGPQGRGASSSLAMVAASAPLASASAALVGGSVMTQYGPANVIYLTVNESSP
ASLLLQLCELLATTPLQGLVFEEERPPPPDQAPLAPMLEFVSAQTGVPVVAVGGGAGLGR
EPQESGSIYLQFTCSTAMQLDVVFEVLEEFDWTSFSVVATRHHGYEDFLAMVEALTDGSF
IGWEKKGVVMLNVSDDPGGTRASRLLKENEAQVRLLYCSQEEAALIFKAAWASGQAGHSH
MWFAVGPALSGLGLEGLPKALFAVRPQGWRDEPRRRIAKGVSVLTHGAMALRKEYGWARG
PHYFAGNCQTDGNQTQRVPDRIRFFSNITLSGRDYSFNSDGYLSNPVLDVISYTEGKGWE
EVGTWQNGVLDLIIQPFSRYGSFLKPLDDTQHLKVVTLEERPFVIVEPADPGTNSCIRDS
VPCRLPLNTTNVPVDEKSSKHCCKGFCIDVLKRLAKIVGFSYDLYLVTNGRHGKRGSDGQ
WNGMVGEVVYKRADMAIGSLTVNKERSEVVEFSVPFVETGISVMVSRSNGTVSPSAFLEP
YSPAVWVMMFVMCLSVVAVTVFIFEFFSPVGYNRSLQSAKKTGGSKFTIGKSIWLLWALV
FNNSVPVENPRGTTSKIMVLVWAFFAVIFLASYTANLAAFMIQEEYIDTVSGLSDKKFQQ
PTEQYPPLRFGTVPNGSTEENIRSNYANMHNFMIRNNQKGVEEAIDNLKTGKLDAFIYDA
AVLNYMARKDEGCKVMTIGSGKVFATTGYGIALHKNTRWKRPVDLALLQLVGDDEIDMLE
RLWLSGICHNDKIEVMSSKLDIDNMAGVFYMLLVAMGLSLLVFAWEHLVYWKIRHCLGRS
GGMDFLLALSRGMYSCCKFEDETVSGGLRNTLPLYQSVPTMPPPPQSHISAAVTCNTTLA
MVQQQQRHHHQQHEQQQAYSMLPAGSPPTTGHSAMALGPSNSPLLQGPMPCSTFLPRHDR
RLAVVDRWNRPKPGTDKPIGGSGGIPDMAQFQQGLPPHWAGGASGGDGNLDEYKRYYGPI
DPEGLGANADPQTGGSQTPKMNQRGTKSSGIPRLPSKGPPPGHLMSKPPLPLPSSPHPPP
FWRRGSLPKRKGSGGPLYENILPLGRRGGGRYGVRDGGGRRGRRPPPLPLPVPVASPALT
TPTTPSHSALYTSSSCSSTSSSSSSSSSSVSPSRSNSPSSSTITYTSSQSFKYRAGSRDV
EDVYDSDELTEESSLLLGRRKGKSQRMSSRSLPCSPPPPPVPPRKPRLQYERERAGSQLA
QLQEWWASWGERERRRGTGTRAEGKEEKQHHKERERERKRRKKGRKKKKREEKERERERK
RRKVKEKKKKREDKAKRRDRGKRSEHEEGGGEQRGQLKAIMQEAYSSYPATRRDSMRKKS
EGSIRSYGWDIPREEERRDCDDKERDGEDTRGKERHRSPYSRHRHAGRPSSSSKQYQSPR
KPSTAVKFWGAGNPSSEIPSSAFLPLIPLSSRRRSKGSDRAALGKEGETRPLLGRNERVE
VHSKEGLSFHEWDSEDEDEDSEEERRKVEQEKRHERRRRTASESERESDKMVGIYSDDDG
SSGEFGKFERYWEGHEGRAVGGIGGGGWFFGTYPAREKAGSINSRDGSLLGRGEGWGGAE
GVGEGGWGSGRIGGTQWPPPPLTPPAPRRYWSVDKLPVKEEKKERRKDKDKGRGDVACNC
QSALEHQHAHSKLAKVSSPSQEELFLHCQSFVTSANSKRHSFKPDRTQNQPKSGSQSNLS
IQRTDRIRQPSTSQVLIPSLPPPTLPALPAPPSSSHPIHIPPPNSSSSVSSPSVVSSTPG
APQPSFMASASAKLLYQRLRSVPPPQRLQSPHLPLKAKSLCSRRGSAHFSSVESEV
NT seq
6291 nt
NT seq
+upstream
nt +downstream
nt
atgttccgggttgcctctgagaataacattgatgtatacactgacacggggactgagttc
atcaggaagtgtataagggatgttgttcccactacacttaagcgtgttaaccctagcaaa
gctgccggcccagacggcatccctagccgcgtcctcagagcatgcacaggcctgctggtt
ggagtgtttatggacatactcaatctctccctatcacagtctgctttccctacttgcttc
aagatgtccaccattgttcctgtacccaagaaagcaaaggcagcaaacaatgcactacta
tatcaagggaagaccataagactgcagtatgagagccttggggagtatgagagccctggg
gagtatgagagccctggggagtatgagagccttggggagtatgagagccctggggagtat
gagagccctggggagtatgagagccttggggagtatgagagccctggggagtccttcttc
gcctgtgaactgccgccgtcgctgctctgcccaccgaactgcgccccccctcccctcccc
cacatggcagccaagcccgccctctccctcctgttggccgtgttggcctgcacggggccc
gcccgctcctcccctcccctcttgctccgcccccgggagagagagagggacttgggtgta
gtcaacatcgctgtggtccactcgggctcctccctgctcccggagacggccgctgctggg
ggaacgggcgccacgaacgggccgggaggtcctcaggggaggggggcctcatcgtcattg
gctatggtggcggcgtctgcgccattggcttctgcgtcagcggctctggtgggcggtagc
gtgatgacgcagtatggcccagccaacgtgatctacctgacggtgaacgagagcagccca
gcgagccttctgctgcagctgtgtgagctgctggccactacgccgctccaggggctggtg
ttcgaggaggagaggcccccgccacccgaccaggctcccctggcccccatgctggagttt
gtctcggcccagaccggagtgcctgttgtggccgtgggaggaggggccggcctgggcagg
gagccacaggaaagcggctccatctacctccagttcacctgctccacagccatgcagctg
gacgtggtctttgaggtgctggaagagttcgactggacctccttctccgtggtggccacg
cgtcaccacggctacgaggacttcctggccatggtggaggcactgacggacggatccttc
atcggctgggagaagaagggcgtggtcatgctcaacgtctccgacgacccgggagggacg
cgcgcgagcaggctgctcaaggagaacgaggcgcaggtgcgtctcctctactgctcccag
gaggaggccgcgctgatcttcaaggcggcctgggcctcgggtcaggccggacactcccac
atgtggttcgccgtggggccagccctgtccggccttggcctggagggcctccccaaggcc
ctgttcgcagtgcggccgcagggctggagagacgagccccgtcggaggattgccaaaggg
gtgtctgtgctgacccacggagccatggctttgaggaaggagtacggctgggcccgaggg
ccacactacttcgcaggcaactgccagacagatggcaaccagacgcaaagggtgccagac
aggatcaggttcttcagtaacattacgctgagtggccgggactattcgttcaacagtgac
ggctacctgtccaatccagtgctggatgtgatttcctacaccgaggggaaaggctgggag
gaggttggcacgtggcagaacggtgttctggatctcatcattcagcccttttcacgctac
ggctccttcctcaagccgctggatgacacccagcacctcaaggtggtcaccctggaggag
aggccctttgtcattgtggagccagccgacccaggcaccaactcctgcatccgggactcg
gtaccctgtagactaccgctcaacaccaccaatgtgccggtggatgagaaatcgtcgaag
cactgctgcaaaggcttctgcattgacgtcctcaagcgattggccaaaatagtgggcttc
tcctatgacctctacctggtgaccaatggcagacacgggaagagggggagtgatgggcag
tggaatggcatggtcggggaggtggtttataaacgggccgacatggccattggctccctg
accgtcaacaaggagaggtcggaggttgtggagttctccgtgcccttcgtggagacgggc
atcagcgtcatggtctcccgtagcaacggcaccgtctcgccgtcggctttccttgagcca
tacagcccagctgtgtgggtgatgatgttcgtcatgtgcctctccgtggtcgctgtcaca
gtctttattttcgagttcttcagtcccgtcggctacaaccgcagcctgcaaagtgcaaag
aagacagggggctctaaattcaccatagggaagtctatctggctgctgtgggctctggtc
ttcaataactcagtgcctgtggagaaccccagaggaaccaccagtaagatcatggtgctg
gtgtgggccttctttgcggtcatcttcctggcctcctacacggccaacctggcagccttc
atgatccaggaggagtacatcgacactgtgtctggcctcagcgacaagaagttccagcag
cccactgagcagtaccccccgctccgatttggcaccgtccccaacgggagcaccgaggag
aacattcgcagcaactatgccaacatgcacaacttcatgatccgcaacaaccagaagggc
gtggaggaggccatcgacaacctcaagactggtaaactagatgccttcatctatgatgcg
gctgtgctaaactacatggcgaggaaagacgagggctgtaaggtgatgaccattggctcg
ggcaaggtgtttgccaccacaggctacggcatcgccctgcataagaacacccgctggaaa
cgccccgtggacttggccctcctgcagctggtgggagacgacgagatcgacatgctcgag
cgcctgtggctctcggggatctgtcacaacgacaagattgaggtgatgagctccaagctg
gacatcgacaacatggcgggggtcttctacatgctgctggtggccatggggctcagtctg
ctggttttcgcctgggagcacctggtatactggaagatcaggcactgcctgggccgttcc
ggtggcatggacttcctattggctctcagcaggggtatgtacagttgctgcaagtttgaa
gatgaaaccgtctctggaggcctccgaaacacacttcccctatatcagagtgttcccaca
atgccgcctccaccccagtcccacatctcagcggctgtaacctgtaacaccactcttgcc
atggtgcagcagcagcagaggcatcatcaccagcagcatgagcagcagcaagcatacagc
atgcttcctgctggatctcctccaactactgggcactctgcaatggcccttgggccatca
aacagtccccttttgcagggtcctatgccgtgctccacttttctgcctcgccatgaccgc
agattggctgtggtagaccgctggaaccgtcccaagcccggcacggacaagcctattggt
ggcagcggtgggatcccagacatggcacagtttcaacagggcttgccccctcattgggct
gggggagccagtggaggggacgggaatctggatgaatacaagcgatactatggcccgatc
gatccagagggcttaggggcaaatgctgacccacaaacaggtggctctcaaacccccaaa
atgaaccagagggggacaaagtcctcaggaattccacggctaccttctaaaggaccgccc
cctggtcacttaatgtccaagccccctctaccgctcccctcatccccacatccaccgcca
ttttggagaagaggcagcctcccgaaaagaaagggctctggggggcctctgtatgagaac
atcctccccttggggagaagagggggagggcggtacggagtaagggatggaggtggcagg
cgaggccgtcgccctcccccactcccattgcctgtccctgtcgcgtcccctgccctcact
acccctaccactccctctcactccgccctctacacctccagctcctgctcctccacctca
tccagttcatcctcgtcctcatcctccgtctccccctcacgctccaactccccctcatcc
tccaccatcacatacacatcgtcccagagttttaagtacagggctggcagtagggatgtt
gaggacgtctatgactctgatgagctgacagaggagtctagcctcctgctaggacggaga
aagggcaaatcccaacgcatgtcctctcgctcactgccttgcagtccgccccctccgcct
gtaccaccccgcaagcctcgtctgcagtatgagagagagagggctgggagccagctagcc
cagctgcaggagtggtgggcctcctggggcgagagagaaagacgcagaggaacaggaacc
agggccgaggggaaggaggagaaacagcatcacaaagagcgagaaagggagagaaagagg
aggaagaaaggccggaagaaaaaaaagagagaggagaaggagagagagcgggagcgcaag
cggcgtaaagtgaaggagaagaagaagaagagagaggacaaggcgaagagaagagaccgg
ggcaagcggtcagagcacgaggagggaggtggtgagcagagagggcagctcaaagcgata
atgcaagaggcctactcctcctacccggctacgaggcgtgactctatgaggaaaaagagt
gaaggttctatcagaagttacggatgggatattccaagggaggaagagaggagggactgc
gatgacaaggaaagagatggagaggacactagaggcaaggaaaggcacagaagtccttac
tcacgccacaggcatgcaggtaggccttccagttccagcaagcagtaccagagccccaga
aaaccctcaaccgctgtcaagttctggggagcgggaaacccatcgtcagagattccttca
tctgcatttctgccactgatccctctctcgtccaggcgcaggagtaagggttcagataga
gcggccctagggaaagaaggggagacgcgccccctgttgggcaggaacgagagagtggag
gttcactccaaagaaggtctgtcgtttcacgagtgggactccgaagatgaggatgaagat
tccgaggaggaaaggagaaaagtggagcaagagaagagacatgaaagaagacgaaggacc
gcatcagagtccgaaagggaaagtgataagatggtgggcatctactcagacgacgacggc
tcctcgggagaatttggaaagttcgaaaggtactgggagggtcatgagggtagagcggtt
gggggaataggagggggaggttggtttttcggcacttatcccgccagagaaaaagctggc
agcataaacagtagggatggctcgttattgggccgtggggagggatggggcggagcagag
ggagtaggggaaggtggctggggatcagggaggataggtggtacacagtggcctccacct
ccattgacaccaccagctcctcgaagatactggtccgtggacaagcttcctgtgaaggag
gagaagaaagagagacggaaggacaaggacaaagggcgaggtgatgtggcttgcaactgc
caatctgccctcgaacatcaacacgctcactctaaattggccaaggtgagctctcctagc
caggaggaactatttctacactgtcaaagctttgtgaccagcgccaattccaaacggcat
tccttcaaacccgaccggacccagaatcaacccaaatcgggaagccagtccaacctcagc
atccagcggacagaccgcattcggcagccttctacatcgcaggtcctcatcccctccctc
cctccaccaacactcccagcccttcctgcccctccctcctcatcccatcccatccacatc
cctcctccgaactcctcctcttcggtctcgtctccctctgtagtatcctccaccccaggc
gccccccagccgtcttttatggcttctgctagtgccaaactcctgtaccagagactgcgc
tcagtgcctccgccccaaaggttacagtcacctcacctgcccctcaaggccaagagcctc
tgctcacggagggggtctgcacacttctccagtgtggagagcgaggtgtga
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