KEGG   Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139372369
Entry
139372369         CDS       T10872                                 
Name
(RefSeq) SWI/SNF complex subunit SMARCC1-like
  KO
K11649  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
ocla  Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03082  ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:ocla00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    139372369
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ocla03021]
    139372369
   03036 Chromosome and associated proteins [BR:ocla03036]
    139372369
Transcription machinery [BR:ocla03021]
 Eukaryotic type
  RNA polymerase II system
   Coactivators
    BAF/PBAF complex
     139372369
Chromosome and associated proteins [BR:ocla03036]
 Eukaryotic type
  Chromatin remodeling factors
   BAF complex
    139372369
   PBAF complex
    139372369
   GBAF(ncBAF) complex
    139372369
SSDB
Motif
Pfam: SWIRM-assoc_1 SWIRM SWIRM-assoc_2 Myb_DNA-binding SWIRM-assoc_3 Myb_DNA-bind_6 Omp_AT DUF919
Other DBs
NCBI-GeneID: 139372369
NCBI-ProteinID: XP_070968182
LinkDB
Position
18:52165582..52184092
AA seq 940 aa
MPNLFSLLRRTDTDRHRHPLTATPCGSCFVLPSQCFLDLRPGGGLCHILGTAYKFKTDQG
LVSDTFGNVLFRGLLGNLHGYSSSPRRRFDLQNSRTDRNVEMFTTLEKTLVQNSCLSRPV
MYVDQEVDQNLNSRLADIITKHQGSLTEDRTQASHHIYPRPAVTDQDWEWVRPVMRKDNY
VLVHWGRHPDSYDSWLSSSNVEGEVQEPPHTHRPWRVHAGWVLDTEVYNEWMNEEDYLVD
DRNVPLILRRRVHVTDQQSLPPSRKFTLVKKRRRSPSPPSSDGKKKGGKKSGGFKRRGPK
EEEEDVEEDLTKDMEDPTPVPNMEEIILPKNVNPKKDSENTPVKGGMMTDLDEIEDDSLL
PGGREDEEGREGLRLSDGEDNITEQTHHIIVPSYTAWFNYNCIHQIEKRALPEFFNGQNK
SKSPEIYLAYRNFMIDSYRLNPQEYLSSTSCRRNLTGDLCAVMRVHALLEQWGLVNYQVD
AESRPLPMGPPPTPHFNTLADTPSGLAPLQHRPLQVSSSQQMLFFPERSVEKPSDSQNFG
LRTDLYARKHPKSKGASSGRDWTEQETLLLLEALEVYRDDWNKVSEHVGSRTQDECILHF
LRLPIEDPYLEDSASSLGPLAYQPVPFSQSENPVMSTVAFLASVVDPRVASAAAKAALEE
FCRVHEEADKVLEFPALNEAEKADVMDGEKMETDSGSQQSLQADRQTVLEPSGGERSVEG
ERVKRENAEMTVTEERDCDSGGNHETDRGEKDEIAGRWREVEQDEGRRLAELELVDGTVT
TAAAAALGAAATKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREKEA
LEQQRQQLLSERQSFHSEQLKHAEMKILQQREQQAPYTPQQHTGQSMPSQMMSTGGNSLT
MAPRHPGAPNGMYPPPQPDGIAPTQPGPPSTAIHSRGAET
NT seq 2823 nt   +upstreamnt  +downstreamnt
atgccaaatcttttcagtctcctgaggaggactgacacagaccgccaccgccaccccttg
accgccaccccttgtggcagctgttttgtcttgccgtctcagtgcttcctggacctgcgc
ccaggaggcgggctttgccacatccttggcactgcatacaagttcaagactgatcagggg
ctggtgagtgacacctttggcaacgtcctgtttcggggcctgcttggtaacctgcatggg
tactcttcctcccccaggagaaggtttgacctacagaactccaggacggaccgaaacgta
gagatgtttactactctggagaagaccctggtccagaatagctgtctgtcgaggcccgtc
atgtatgtggaccaggaggtggatcagaacctgaacagcagactggctgacatcatcacc
aaacaccagggttcgttgactgaggacagaacccaagcctctcaccacatctacccccgt
ccagctgtcacagaccaagattgggagtgggtgcgccctgttatgcggaaggacaactat
gtgttggtgcactggggcaggcaccctgacagctacgatagctggctgtcctccagtaac
gtagagggagaggtacaggaacctccacacacacacagaccttggagggtgcatgcaggc
tgggtgttggatacggaggtgtataatgagtggatgaatgaagaagactacctggtagat
gacagaaacgttcctctcatcctccgccggagagtccacgtcacagaccaacagtctctc
cctccctcccgtaagtttactctagtgaagaagagaagacgctccccctctcctccctct
tccgatggcaaaaagaaaggaggaaagaagagtggtgggtttaagaggcgtgggccaaag
gaggaagaggaagacgtagaggaggatctgactaaagatatggaggatccaacacctgtc
cctaatatggaagaaattatactgcctaagaatgtgaacccaaagaaggacagtgagaac
actcctgtcaaaggagggatgatgaccgacctggatgaaattgaggatgactctctgctt
cctggtggaagggaggatgaggagggcagagaggggctgcgtctgtcagatggagaagac
aacatcacagaacaaactcaccacatcatcgtcccgtcctacaccgcctggttcaactat
aactgtattcaccagatcgagaaacgagctcttccagagttctttaacggacagaacaag
tccaaatctccagagatatacctggcatatcgtaacttcatgattgactcgtaccggctg
aacccccaggagtacctcagctccacctcctgcagacggaacctgacaggagacctctgc
gctgtcatgagggtccatgcgttgttggagcagtgggggttagtgaactaccaggtggat
gcagaaagcagacctctccctatgggaccccctcccacccctcacttcaacacactggct
gatacaccctcaggactggccccgctgcagcacagaccactccaggtgtcgtcctcccag
cagatgttgttcttccctgagagaagtgtagagaagccctcagactctcagaactttggc
ctcagaacagacctgtatgccaggaaacaccccaagagtaaaggagccagttcagggagg
gattggacagaacaggagaccctcctactgttggaggcgttagaggtctatagagacgac
tggaacaaggtgtccgaacacgtggggtctcgtacccaggacgagtgcatcctccacttc
ctgcgcctgccaatagaagacccttatctggaggactccgcctcctctcttggcccattg
gcctaccagcccgttcctttcagccaatcagagaatccggtgatgagcaccgtggcgttc
ttggcatccgtggttgatccccgagttgcctccgccgccgccaaggctgctttggaggag
ttttgtcgtgtgcatgaggaagctgacaaggttctggagttccctgcactcaatgaggct
gagaaggcagatgtgatggatggtgagaagatggagactgactctggctcccagcagtct
ctgcaggcggatagacagactgttctagagcccagtggaggagagaggtcagtggaagga
gaacgagttaagagagagaatgctgaaatgacagtcacagaggaaagagactgcgatagc
ggagggaaccacgagacagaccgaggggagaaggatgagattgctggacgatggagggaa
gtagagcaggatgaagggaggagactagcagagctggagttggtagatgggaccgttacc
acggcagcagctgctgctctcggcgccgccgctactaaggccaagcacctagcagcagta
gaggagaggaagatcaagtctctggtggctctgttggtggagactcagatgaagaagctg
gagatcaaactgagacactttgaggagctggagaccatcatggaccgagagaaagaggct
ttggagcaacagcgtcagcagctgttgtcagagcgacagagtttccactctgagcagctg
aaacatgcagagatgaagattctacagcagagagagcagcaagcaccatacactccacaa
caacacacaggccagtccatgcccagccagatgatgtctactgggggaaactctctcacc
atggccccccgacaccctggagctcccaacggcatgtacccaccaccacagcctgatggg
atagctccgacccagcctggtcctccaagcacagccatacacagccggggagcagaaaca
tga

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