Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139372437
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Entry
139372437 CDS
T10872
Name
(RefSeq) protocadherin-20-like isoform X1
KO
K16498
protocadherin delta 1
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
139372437
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ocla01009
]
139372437
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ocla04515
]
139372437
Protein phosphatases and associated proteins [BR:
ocla01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
139372437
Cell adhesion molecules [BR:
ocla04515
]
Cadherins
Protocadherins
139372437
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_CELSR2_9th
Cadherin_2
Adeno_E3_CR2
Motif
Other DBs
NCBI-GeneID:
139372437
NCBI-ProteinID:
XP_070968252
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Position
18:9414540..9430503
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AA seq
894 aa
AA seq
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MFNKTGPGLSSRGVLWGLCILLLYTSPLCCFANFSQAKELVYKIKEGLPSGTLIGSMGSD
LHLDLSLDPHVLFNLPQKKPSDQYVTLNSTTGQLFTSGNEIDRETLCPDSSEYNQGCVLS
LDVFVLPQQYFQLVKVKILVEDVNDNRPRFPTGEIRVSVPENTQVNARFAVEQSATDPDL
GFHGVQTYWLVNDFGVFTLDVEENEGGELTPFLIVTDELDRERQEEYVTDIIAEDGGLPP
LLGTATLRIIITDVNDNCPQFTESQVNVTLYGNTTKGEHLSRLHAFDPDQGANAVISYAY
SDRVPREARALFHLDRITGVIKLAGQINTATGKFYKLTVLANGPGCVPAVATVTVHVIRV
ASDPPVITPRYIAAEKDGVVKMKESEPPFSPIAFFTVSNTDQKGQGTECLLEGSGPFRLS
PYKRLKNEYLLETTEPLDYEQRQDYELTVVLRNPRGLVIKTFVKILVLDENDNAPVFKQS
LYEVSVEENNPPNSFLTQLQATDQDSEARGEVIYTLGSDAPSIFLLERLTGVLTVSTSLD
REEKQTYRFMVRAVDRGTPRRESIATVVITVLDRNDNSPRFINKDFTFFVPENFPGFGEI
GVLSVTDADAGENGWVALSIVNGSDIFVIDAGRGALRARTPLDREQQGTYYLWIEAVDGG
EPSLSCLTVVTVLLLDVNDNPPVVLFPQSNQSYMLVLPSTLPGTSITEVYAVDKDTGMNA
VIAYSIIKRKGGEPGSFDIDPDTGNITLKRELSDRGLYSLLVKVSDHGQPEPLHSTVLVN
LFVNETVSNESYIQSLLTGEEAEIQMEEKQWYVGKLTERPGREDLFPCQPLLIALSVTCL
GLFCIVVTLTAYICCRKLKKWRKRQMKRLEVEMPLKTNGDVRDADRKRTEISNI
NT seq
2685 nt
NT seq
+upstream
nt +downstream
nt
atgttcaacaaaacaggacccggacttagctcgagaggagtactgtggggtttgtgtata
ctcctcctttacaccagccccctctgctgttttgctaatttcagccaagcgaaagagctg
gtctataagataaaagaaggattaccctcagggacactcatcgggtccatgggctccgac
ttacacttggatttatccctcgatccccatgttttattcaatctgccccagaagaagccc
agtgatcagtatgtcactctgaacagcactacgggacagctgtttacgtctgggaatgag
atcgacagggagacgctctgccccgactcctcggagtacaaccagggctgcgtcctctcc
ctggatgtgttcgttctaccccagcagtatttccagctggttaaggtcaaaatcttggtc
gaggacgttaacgataatcggccgcgcttcccgacgggcgagattagggtttccgtcccg
gagaacacccaggtcaacgcgaggttcgcggtggagcagtcagcgacggaccctgatctg
gggtttcacggggttcagacttactggctggtcaacgacttcggggtgttcactctggac
gtagaggagaacgaggggggtgagctgacacccttcctcatcgtgaccgacgagctggac
cgggaacgacaggaggaatacgtaacggatattatagcagaggacggtgggttaccacct
ctccttggcaccgccacgttgaggattataatcactgatgtcaacgataactgtcctcag
ttcacagagtcacaggtcaatgtgacgctctacgggaatacgactaaaggagagcacctg
tccaggttacacgccttcgaccccgaccagggcgccaacgccgtgatcagctatgcgtac
agcgaccgcgttccccgggaggctagagctctgttccatctggaccggattaccggggtg
atcaaactggccggtcagatcaacaccgcaaccgggaagttctacaaactcactgtcctc
gccaacgggcccggttgcgtccctgccgtcgccacggtgacggtgcacgtgatccgggta
gcttccgatccgcctgttattacgccgcgctacatcgcggcggagaaagatggcgtggtc
aagatgaaggagtccgaaccgccgttttccccaatcgcgtttttcaccgtgtcgaacacg
gaccagaaaggacaagggacggaatgtctacttgaaggatccggcccgttccgactgtca
ccttacaaacggttgaagaacgagtatctgttagagacgacggagccgctggactacgag
cagaggcaggactacgagctgaccgtagtgctcaggaaccccagaggtctcgtcattaag
accttcgttaagatcctggttctggatgagaacgacaacgcgccggtcttcaaacagtct
ctgtatgaggtctccgtggaggagaataaccctcccaacagcttcctgacccagctccag
gccacagaccaggacagtgaggccagaggagaggtcatctacacgctggggtcagacgct
ccctccattttcctcctggagaggctgaccggcgtgctgaccgtgtccacgtctctggac
cgagaagagaagcagacctacaggttcatggttcgggcggtggaccgagggacccccagg
agagagtctatagctacagtggtcatcactgtgctggaccgcaatgacaacagcccgcgc
ttcatcaataaagacttcacgttctttgtgccggagaatttcccgggttttggcgagatc
ggcgtcctctcggtaacagacgcggacgcaggcgagaacggctgggtggccctctccatc
gtcaacggcagcgacatcttcgtgatcgacgcggggcgtggcgctctcagggcccgtacc
cctctggaccgggagcaacaggggacgtactacctctggatcgaggcagtcgacggaggg
gaaccctctctctcctgcctcaccgtggttaccgtcctcctccttgacgtaaacgacaac
cctcccgtcgtcttgttcccccagtctaaccagtcctacatgctggtgttgcctagcacc
ctaccagggacctccatcacagaggtttacgccgtggataaagacacgggaatgaacgcc
gttatcgcctacagcatcatcaagaggaagggtggcgagccggggtcgtttgatatcgac
ccggacacagggaacatcacgttgaagagagaactgagtgaccgcggtctctacagtcta
ctggttaaagtctcggaccacggtcaacccgaacctctccactccacggtcctggtcaac
cttttcgtcaacgagacggtttcaaacgagagctacatccagagtcttctcaccggggag
gaggctgagatccagatggaggagaagcagtggtacgtgggtaaactgacagagaggccc
ggcagggaggacctgttcccctgtcagcctctactcatagctctgtcagtgacctgtctg
ggactattctgcatcgtcgtcacgttgactgcttatatatgctgcaggaaactgaagaaa
tggaggaaacgtcaaatgaaaagactagaggttgaaatgcctttgaagacgaacggtgac
gtgcgcgacgcagatagaaagcggacggaaatctcaaacatttga
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