Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139372500
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Entry
139372500 CDS
T10872
Name
(RefSeq) thrombospondin-type laminin G domain and EAR repeat-containing protein-like isoform X1
KO
K24437
thrombospondin-type laminin G domain and EAR repeat-containing protein
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
ocla03037
]
139372500
04990 Domain-containing proteins not elsewhere classified [BR:
ocla04990
]
139372500
Cilium and associated proteins [BR:
ocla03037
]
Other cilia and associated proteins
Stereociliary proteins
139372500
Domain-containing proteins not elsewhere classified [BR:
ocla04990
]
Thrombospondin domain-containing proteins
Other thrombospondin domain-containing proteins
139372500
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EPTP
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
139372500
NCBI-ProteinID:
XP_070968327
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All DBs
Position
18:complement(18331200..18342164)
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AA seq
751 aa
AA seq
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MSSPMLLLPLLLFLGLRVINAAAETRRPCSDLLPLDLLSRVLSRAGEGVRGVTGGGVHLI
QSGGVRGVRLSRPHPSLDFPSSQHLVNCHLFPREFSIVTTLKVSLVAPKKNEYIFSVVEE
KEEEDARIGKRKGETQGGTDGDWYRKKDGERGGRDDESDEERDGETDGGGERLMDGEKRK
GSRDGENSNSQGRLLIGLRFSRDRLHFLFRGRSGGVMARWVFRGIELADDRWHTLVLAFS
GHYATLTVDCNTHLELRVHSKSLPSDLSVQGSRFHIGSRGRWNGLFSGLIRQLVLVPGSD
ATPRVCPSSNPGLAELSVPAVLLDLPQKKTRSDLTLPSYESEVRVSVGLEKSCSSSVRGQ
LWFNPIRRALYLCDGTLWVPMLQESQRLDYVLEQQVLSTSSETYDIEVFSVQGLGLMAAM
AHRSPSLGSAVYLWRDGGFHLYQKISTHGALSWRHFTMGKKIFLVVSNSRESTGKEETVE
KDELSVIYRWNKKTQRFVHYQALQTHCARDWEAFRIQGHTYLAVANHRQGNTNHTIDSVV
YKWDRGTQLFVPHQALRTSGAYDWEAFTVGPYHFLAVANAFDGQTTHVDSVIYVWVDGSF
RLFQTIKTFCATDWEMFQIGSRVFLVVANGHQLHGNGPGRYAINSTIYELDMSSQLFLRF
QDIVTYSAVDWEFFTVGEESYLVVANSFDGESHSLNSIIYRWQGYEGFVPIHRLPSIGCS
DWEFFTSGEDSYLIYSSATAPLSKVFRLKTH
NT seq
2256 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcgccgatgctgctgttgcctctgctgctgtttctcgggttaagggtcatcaac
gcagctgcagagacacggagaccatgcagtgacctgctccccctggaccttctgtcccgt
gttctctccagggcaggggagggggtgaggggggtaacaggagggggggtgcatctgatc
cagtctgggggtgtgaggggtgtccgtctgtcccgtcctcacccttccctggacttcccg
tcctcccagcacctcgtcaactgtcacctcttccccagagagttctccatcgtcaccacc
ctgaaggtcagcctcgtcgcccctaagaaaaacgagtacatattttctgtggtggaggaa
aaggaagaagaggacgcaaggattggaaagaggaagggggagacacagggaggaactgat
ggagattggtacagaaagaaggatggagaacgaggagggagggatgacgagagtgatgaa
gagcgggatggagagacagatggagggggagaaagactaatggacggagagaagaggaag
ggaagtagagatggagagaacagcaacagtcagggacggcttctgattggcctgcggttc
tccagagacagactccacttcctgttcagaggtcgcagcgggggggtcatggcacgctgg
gttttccgaggcatcgaattggctgatgatcgctggcacacgttggttttagcatttagc
ggacactacgctactctcactgtggactgcaacacacacctggaactcagggttcactcc
aagtcgttgccctctgaccttagtgttcagggttccagattccacatcggcagccgaggg
agatggaatggcctgttctcaggtctgatcagacagctggtcctggtgccaggctctgat
gccacccctcgtgtctgcccatcctccaaccccgggctggcagagctgtctgtgcctgcg
gtactgctagacctaccacaaaaaaagactaggagtgacctcacgctgccttcatatgag
tcagaggtgcgggtgtctgtagggctggagaagtcctgttccagttcagtaagaggacag
ctgtggttcaaccccatcaggagagctctctacctctgtgacggtacactctgggtcccc
atgctgcaagagtcccagagactagactatgtcttggagcagcaggtcctctccaccagt
tcagagacgtatgatattgaggtgttcagtgtacaagggctgggtttgatggcagcaatg
gcccaccgctccccctccctgggctctgcagtctacctctggagagatggaggctttcac
ctttaccagaagatcagcacacatggagctctctcctggagacactttacgatggggaag
aagatattcctggtggtgtctaactccagggagagcacagggaaggaggagacagtggag
aaagatgaactgtcagtgatctacaggtggaataaaaagacacagaggtttgttcattac
caggcgctccagacacactgtgcacgggactgggaggccttccgcatccaaggacacacc
tacctcgccgtggccaaccacagacaaggtaataccaaccacaccatagacagtgtggtc
tacaagtgggaccgtggtacgcagctgtttgtaccacaccaggccctgcggacctctggg
gcttacgattgggaggccttcacggtcggaccctaccacttcctggctgtggcgaatgcg
tttgacggacagaccactcacgttgactcggtcatctatgtctgggtggatggaagtttc
cgcttgtttcagactattaagacgttctgtgccacagactgggagatgttccagatcggc
agcagggtcttcctggtggttgctaacggacaccaactccatggcaatggccccggtcgc
tatgccatcaactcgacaatctacgagctggacatgagctctcagctgttcctgcgtttt
caggacatagtcacatacagtgctgttgactgggagttcttcacagtaggagaggagagt
tacctggttgttgcaaactcctttgatggagagtctcactctctgaacagcattatctac
aggtggcagggatacgaggggtttgttcccattcaccggctcccctccatcggatgcagc
gactgggaattctttacttccggagaggattcctatctgatctactccagcgccacagca
cctctctccaaagtcttccgtctgaaaacacactga
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