Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139372570
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Entry
139372570 CDS
T10872
Name
(RefSeq) exosome complex component RRP42
KO
K12589
exosome complex component RRP42
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
139372570
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ocla03019
]
139372570
Messenger RNA biogenesis [BR:
ocla03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
139372570
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
139372570
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
139372570
NCBI-ProteinID:
XP_070968414
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All DBs
Position
18:32204151..32213305
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AA seq
291 aa
AA seq
DB search
MATVQVSEAEKVYILHGVRDDLRVDGRGCEDYRHMEIETDMVSNTDGSAKVTLGHTDVLV
GVKAEMGKPRPMVPDEGYLEFFVDCSANATPEFEGRGGDELGMELSNTLYKVFNNRYSVD
LKSLCISPGEHCWVLYVDVLLLQCDGNLFDAISVAIKAALFNTKIPKVHISEDEEGGKEI
ELSDDPYDCMRLNVENVPCIVTLCKVGHRHVVDATLQEKACSVASLIISVTHKGTVTCVR
KVGGGSLDPESIFEMTETGKRVGKALHAPLMALLQEEESLGKKRQKVGFLG
NT seq
876 nt
NT seq
+upstream
nt +downstream
nt
atggctactgtacaagtcagtgaggctgaaaaggtgtatattttgcatggtgtacgggat
gacttacgggttgatggacgaggatgcgaggactacagacacatggagattgagacagac
atggtgtcaaatacagatggctcagccaaagttacactggggcatacagacgtgctagtg
ggagtcaaagctgaaatgggaaagccaaggcccatggtcccagatgaaggctacctggag
ttttttgttgattgctctgccaatgccacaccagaatttgagggtcggggtggtgatgag
ctgggcatggagttgagcaacaccctgtacaaagtgttcaacaacagatacagtgtggac
ctgaaaagcctctgcatcagcccaggggaacactgctgggtgctctatgtggacgtgctg
ctcctgcagtgtgatggaaatctttttgatgccatctctgttgcaattaaagcagctctc
ttcaatacaaaaattcccaaagtgcacatctctgaggatgaggaaggagggaaggaaata
gagctgtcagacgacccctatgactgcatgcgactcaatgtggagaacgttccctgcatc
gtgaccttgtgcaaggtgggccataggcacgtggtggacgccacgctgcaggagaaggcg
tgttcagtggccagcctgatcatctctgtcacacacaaggggacggtcacctgtgtcagg
aaggtgggggggggcagcctggacccagagagcatctttgagatgacagagacagggaaa
cgggtagggaaagccctccacgcccccctcatggcgcttctgcaggaggaggagagtctg
ggaaagaagagacagaaagtgggctttcttggttag
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