Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139372823
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Entry
139372823 CDS
T10872
Name
(RefSeq) exosome complex exonuclease RRP44-like
KO
K12585
exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ocla00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
139372823
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ocla03019
]
139372823
Messenger RNA biogenesis [BR:
ocla03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
139372823
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Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
OB_Dis3
PIN_4
Rrp44_CSD1
Rrp44_S1
CSD2
OB_HELZ2
Motif
Other DBs
NCBI-GeneID:
139372823
NCBI-ProteinID:
XP_070968740
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All DBs
Position
18:4353259..4367228
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AA seq
949 aa
AA seq
DB search
MLKSKTFVKKTRSGGIMKIVREHYLRDDIWCGSEVCTECKQEETVLQKDACIESNLCSFP
HYLLPDTNIVLSQIDILEDPLIKNVIILQTVLQEVRHRSAPIYKRLKDILHDKEKHFYTF
TNEHHRETYIEREQGESANDRNDRAIRISTKWYSDHLNNTPTDKKLKVVLLTNDRGNKEK
AEESGLLTYRCEEYVKSLIANPELVDRLALTNDDKNEITSSKVLFPEHLPLSRIQSGIKS
GTFQQGTFRASRDNYLEATVFVHGEGDDSTEVLIQGLQNLNRAVHQDLVAVEILPLNQWV
APSSVVLQDEGPKEDDVTEEEEAELKSGPSGAASRKPTGRVVGIIKRNWRPFCGMLFLSQ
IKEATRHLFTPADRRIPRIRIETRQAATLAGQRIMVAIDGWPKHSRYPNGHFVRSLGSAG
DKETETEVLLLEHDVPHQDFSQAVLSFLPKMPWNITEEDMAVREDLRNLTVCSVDPPGCT
DIDDALHCRDLPNGNQEVGVHIADVSHFIRPGNAMDLEAANRGTTVYLTGRRIDMVPELL
SSNLCSLRSSVERLAFSCIWEINDKAEIVKTRFTKSVINSKASLTYAEAQMRIDDANMND
DTTKSLRGLNRLAKILKKRRIEKGALTLSSPEVRFHIDSETHDPIDLQTKELKETNSMVE
EFMLLANISVAQKIYDEFSECALLRKHPAPPPSNYDILNKAAKSKDMVIHTDSAKALADS
LDAAQVDGFPYFNTLLRILATRCMMQAVYFCSGMDSDFHHYGLASPIYTHFTSPIRRYSD
IIVHRLLAVAIGADSTYPDLMDKHKQSALCNNLNYRHKMAQYAQRASVAYHTQLFFKSRG
ILNEEGFILFVRKNAIIVLIPKFGLEGTVFFENKDKPSPKLIFNEEAPSLTVEGHSFNMF
DKVKVTISLDASNVQHQKIRMSLVEPVISGVSVAPSEPEPEVKRAKLDR
NT seq
2850 nt
NT seq
+upstream
nt +downstream
nt
atgttgaaatcaaaaactttcgtaaagaaaacccgatcaggcgggatcatgaaaatagtc
cgcgagcactacctgcgagacgatatttggtgcggaagtgaagtttgtacagaatgcaag
caagaagagactgtgttgcagaaagacgcttgcattgaaagcaacttgtgttctttccca
cactatttactcccagacacaaatattgtgttgagccagattgatatcctggaggatccc
ttgatcaagaacgtgatcattctgcagactgtactccaagaggtccgccacaggagcgct
cccatctacaagcgattgaaagacatccttcacgacaaggaaaaacacttttacactttc
actaacgaacatcacagagaaacgtatatagagagagagcagggggaaagcgccaacgat
cggaatgacagagccatccgcatatctaccaagtggtacagtgatcacctgaacaacacc
cccacggacaagaagctaaaggttgttttgctgaccaacgaccggggcaacaaggagaaa
gcagaggagtccggcctgctcacatacagatgtgaggagtacgtcaagagtctgatagcc
aaccctgagctggtggatcgactggctttgaccaacgatgacaagaatgagatcaccagc
agtaaggtgttgttcccggagcacctgcccctgtctaggatccagtctgggattaagagt
gggaccttccaacagggaacgttccgggctagcagagacaactacctggaggctactgtg
tttgtccacggagaaggagatgacagtacagaggttctgatccaaggcctgcagaacctg
aacagggctgtccatcaggacctggttgctgtggagatcctgcctctgaaccaatgggtg
gctccgtcctctgtggtgctgcaggacgaggggcccaaggaggatgatgtcacagaggag
gaggaggcagagttgaagagtggtccgtctggggcggcgtcacggaagcccacaggcagg
gtggtgggcatcatcaagaggaactggagacccttctgtggcatgctcttcctgtcccaa
atcaaagaggcgacccgtcacctcttcaccccagccgaccgccgtatccccaggatccgt
atagagacgcgccaggcggccacgttggcaggacagaggatcatggtggccatcgacggc
tggcccaagcactccagataccctaatggccattttgttcgtagcctgggaagtgcaggg
gacaaggagacggagacggaggtgctactactggagcatgatgtccctcaccaggacttc
tcacaggccgtcctcagtttcctccccaagatgccctggaacatcacagaggaggacatg
gctgtgagagaggacctgaggaacctgaccgtctgcagtgtggatcctcctggctgtacg
gacatagatgatgctctgcactgtagagacctgcccaatggaaaccaagaggttggtgtc
cacattgctgatgtgagccacttcatccggccaggcaacgctatggacctggaggctgct
aacagaggaactacagtctacctgactggaaggaggatcgacatggttcctgaactgctg
agctccaacctgtgttctctacgatccagtgtggagaggctggccttctcttgtatatgg
gagatcaacgacaaggctgagatagtcaagaccagattcactaaaagtgtcatcaactcc
aaggcctccctgacgtacgccgaggcccagatgaggattgatgacgccaacatgaatgat
gacaccaccaagagcttacgaggcctgaacagactagccaagatcctgaagaaacggagg
atagagaaaggcgcgttgactctctcctcgcccgaggttcgcttccacatcgacagtgag
actcacgaccccatagacctacagaccaaggaactcaaggagaccaactcgatggtggag
gagttcatgttgctggccaacatctcagtagctcagaagatttatgatgagttctcagag
tgtgctcttctcaggaagcaccccgcccctcctccatccaactacgacatccttaacaag
gctgccaagtctaaggacatggtgatccacacggactcggccaaggctctagctgactct
ctggacgcggcccaggtggacggcttcccttacttcaacaccttgctgcgtatcctagca
acacgctgcatgatgcaggctgtgtacttctgctccgggatggacagtgacttccaccac
tatggactggcctctcccatctacacacacttcacctcacctatcagacgatactctgac
atcatcgtgcatcggctgctggctgtagccattggagcagacagcacttacccagacctg
atggacaaacacaagcagtctgccctctgcaacaacctcaactacagacacaagatggcc
cagtacgcacagcgagcctctgtagcctaccacacacagctgttcttcaagagcagaggc
atcctgaacgaagagggcttcatcctgtttgtgaggaagaacgccatcatcgtcctcatc
cctaagtttggtctggagggaacggtgttctttgagaacaaagataaacccagccccaaa
ctgatcttcaacgaagaggctcctagtctgacggtggagggccactccttcaacatgttt
gacaaggtcaaggtgaccatcagtctggatgcgtccaacgtccagcaccagaagatcagg
atgtccctggtcgaacctgtgatctctggagtgagtgtcgcgccgtctgaaccagaacca
gaggtcaagagagctaaactggaccgttga
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