Oncorhynchus clarkii lewisi (westslope cutthroat trout): 139372825
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Entry
139372825 CDS
T10872
Name
(RefSeq) transforming growth factor-beta receptor-associated protein 1 homolog
KO
K20177
vacuolar protein sorting-associated protein 3
Organism
ocla Oncorhynchus clarkii lewisi (westslope cutthroat trout)
Pathway
ocla04148
Efferocytosis
Brite
Membrane trafficking [BR:
ocla04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
139372825
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
Clathrin
TPR-S
Motif
Other DBs
NCBI-GeneID:
139372825
NCBI-ProteinID:
XP_070968744
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All DBs
Position
18:4320524..4331868
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AA seq
874 aa
AA seq
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MSVKAFELVPAVERELLMGDKARINIECIECCGKHLYVGTNDCFIHHFLLEEHATTKGML
SYTVQKLLFKYLGLKKPVEALKAASALERIIVLCDATVSVIDMITLEPVPSGGAKIKGVA
AFCVNENPVNGDPFCVEIGVLSARRRTVQIYMVYEDRVQLVKEVNTPEQPCAVSLDGYFL
CLALSTQYMILNYSTGAAQDLFPYDSEERKPIVKRIGREEFLLAAPGGLGMFANAEGISQ
RAPVNWSESVMGAAVCFPYVVALDEGFVTIHSMLDQQLKQTLSFRDGHILQDFEGKVVLA
STKAVYVLVPLPLERQIQELLAGHRVEEALSLTEGARRNIPKDKFQILHKRILQQAGFIQ
FGQLQFLDAKEHFRTGQLDVRELISLYPLLLPASSSFARCHPPLHGFADLNHLAQGDQDK
VQRCKRFLITYLGEVRSTEGANGCREDVDTALLKLYAEQDHESLLDLLASPNACLLADSA
PWLEKHHKYFALGLLYHYNGQDSAALQLWVRIVNGDLQDSTRSDLYEYIVDFLGFCSNPD
LVWKYADWALQRDQTIGVQIFTRRPVGQDQVKEQKDQVNPDDVITYLGKHSQALLLYLEH
LVLGRRIQKEKLHTHLAVQYTDRVLSLLSQSPPVDQQVSVARDKLQLLLRESSLYRVQLL
LGKIQECDQLFLERATLHGKLEEHDKALHILVHQLKDFPAAEAYCVWGSASRDPAYQQSL
FHLLLGVYLDRDLPSSTVTGDLEMAAVDLLNRHGEVFDAVRVLDLLPEGWSLQLLRPFLG
RALRGSMHACRTSQVALGLARSENLQLQHDRLKQRRSPVLVSQKKGCVLCHNTFSEPDCV
CLPGGVPVHTHCAAQRVVRDSPTRRQLANSNNHT
NT seq
2625 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtgaaggcatttgagctggtccctgccgtggagcgggagctcctgatgggagac
aaggcccgcatcaacattgagtgcatcgagtgctgcggcaagcacctgtacgtgggcacc
aacgactgcttcatacatcacttcctgctagaggagcatgccacgaccaaggggatgcta
tcctacaccgtccagaagctgctgttcaagtacctgggcctgaaaaagccagtggaggcc
ctgaaggccgcgtcagcgttagaacgcatcattgtgctctgtgatgctacagttagtgtt
attgacatgatcaccttagaacccgtgccttcgggcggggccaagattaagggcgtggct
gcgttctgcgtcaacgagaacccggtgaacggggacccgttctgcgtggagatcggggtg
ctttcggcccggcggcgcaccgtacagatatacatggtttacgaggacagggtgcagctg
gtgaaagaggtcaacacgccggagcagccgtgtgcggtcagtctggacggttacttcctg
tgcctggccctctccacgcagtacatgatccttaactacagcacaggggccgcgcaggac
ctgttcccctatgacagcgaggagaggaagcccatagtcaagaggatcggcagggaggag
ttcctcttggctgcccctggtggcctgggtatgtttgccaatgcagagggtatatcccag
cgtgccccagtgaactggtcagagagtgtgatgggagcggctgtgtgttttccctatgtg
gtggcgctagacgagggcttcgtcaccatccacagtatgctggaccagcagctcaaacag
accctctccttcagagacggacacatcctacaggactttgaaggtaaggtggttctggcc
tccactaaggctgtgtacgtgctggtgcccctacccctggagagacagattcaggagctg
ctagctggacacagagtggaggaggccctgtctctgactgagggagccaggaggaacatt
cccaaagacaagttccagatattgcacaaaagaatcctccagcaagcaggattcatacag
tttggacagcttcagtttctcgacgcgaaagaacatttcaggacaggtcagttggacgtc
cgggagttgatctccctctaccctctcctcctcccggcctcctcctccttcgcccgctgc
cacccgccgctccacgggttcgccgacctcaaccacctggcgcagggggaccaggacaag
gtccagaggtgcaagaggttcctcatcacgtacctgggtgaggtgcgaagcacggagggg
gctaacggctgccgggaggacgtggacacggctctgttgaagctgtacgctgagcaggac
cacgagagtcttctggacctgctggcctcccccaacgcctgtttactggcagacagcgcc
ccctggctagagaaacaccacaagtattttgcactaggcctcctctaccattataacggc
caggattcagctgctctacagttgtgggtgcggatagtgaatggggaccttcaggactcg
accaggtctgacctgtatgagtacattgtggacttcctgggtttctgttccaacccggac
ctggtgtggaaatatgcggactgggccctgcagagagaccagacgataggggtgcagatc
ttcaccaggaggccggtgggtcaggaccaggttaaggagcagaaggaccaggtgaaccca
gacgacgtcatcacgtacctggggaaacacagccaggctctgctgctctacctggaacac
ctggtgctgggccgacggatacagaaagagaagctccacacccacctggcagtgcagtac
acagacagagtcctgtctctcctgtctcagtcccccccagtggaccaacaggtgtcagta
gcccgggacaaactccagctcctcctcagggagtccagcctgtaccgcgtccaactacta
ctgggtaagatccaggaatgtgaccagttgtttctggagagagccacgctccacgggaaa
ctagaggagcacgataaggcgttacacatcctggtgcaccagctcaaagacttccccgct
gctgaggcctactgcgtgtggggttccgcctcccgggacccggcctaccagcagagcctc
ttccacctcctcctgggggtctatctggaccgggaccttcccagtagtacggtcaccggg
gatctggagatggcagcggtggacctgttaaaccggcacggggaggtgttcgacgctgtg
cgcgtgctggacctgcttcctgaaggctggtccctgcagctgcttcgcccgttcctcgga
cgcgccctgcgggggagtatgcacgcctgccgcacctcccaggttgcattggggctggcg
aggtcagagaacctacagctgcagcacgacaggttgaagcagaggaggagcccagtcctg
gtatcacagaagaaggggtgtgttctgtgtcacaacaccttcagcgagccggactgtgtg
tgtcttccaggaggcgtgcccgtacacacacactgtgccgcccagagggtggtacgagac
tcgcccaccaggagacaactagccaatagcaacaaccacacatga
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